Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0571.Seq
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1647 + 35032328-35033803                                         31   1.4  
01_05_0694 - 24347642-24348246,24349915-24349993,24350473-243506...    30   1.8  
10_01_0316 + 3479574-3482679,3482766-3483127                           28   7.3  
12_02_0702 - 22278513-22278751,22279054-22279889,22279932-222799...    28   9.6  

>04_04_1647 + 35032328-35033803
          Length = 491

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
 Frame = +3

Query: 258 SFLPCVPLYSAR----LFVAT----YHRGLSSFTRNGAARPPSDVTCVSTSHCTDCRAAS 413
           S++PC   Y  R    L  A+    +H   SS +R    R PS +   S  H +DCRAAS
Sbjct: 113 SWVPCTSSYQCRNCSSLSAASPLHVFHPKNSSSSRLIGCRNPSCLWIHSPDHLSDCRAAS 172

Query: 414 S 416
           S
Sbjct: 173 S 173


>01_05_0694 -
           24347642-24348246,24349915-24349993,24350473-24350607,
           24351486-24351578,24351801-24351926,24352285-24352332,
           24352552-24352653,24353234-24353317,24353754-24353825,
           24354136-24354292,24354520-24354563,24354806-24354918,
           24355252-24355368,24356330-24356399
          Length = 614

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 336 RNGAARPPSDVTCVSTSHCTDCRAASSRIKCLYFITSDNSNI 461
           +N  + P +    V    C  C A  SRIK +++++S+ SN+
Sbjct: 175 QNEISHPSNGRKEVVNKDCNSCSALPSRIKRVFYMSSEGSNL 216


>10_01_0316 + 3479574-3482679,3482766-3483127
          Length = 1155

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 21/88 (23%), Positives = 39/88 (44%)
 Frame = +3

Query: 153 LIIYMSPYATDTRTVTIRCEASSGSDVNKSVRFVASFLPCVPLYSARLFVATYHRGLSSF 332
           L++ + P AT  +        S+ S    +   + SFL  +P  S RL + ++ +  SS 
Sbjct: 13  LLLLLFPLATSAQPPP----PSNTSASTSAAAVLLSFLDSLPPASQRLLLPSWRQSRSSS 68

Query: 333 TRNGAARPPSDVTCVSTSHCTDCRAASS 416
           +   A  PP     +  + C+D  A ++
Sbjct: 69  SSGNATAPPPHCAFLGVT-CSDTGAVAA 95


>12_02_0702 -
           22278513-22278751,22279054-22279889,22279932-22279975,
           22280350-22280463
          Length = 410

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/80 (23%), Positives = 37/80 (46%)
 Frame = +3

Query: 156 IIYMSPYATDTRTVTIRCEASSGSDVNKSVRFVASFLPCVPLYSARLFVATYHRGLSSFT 335
           II   P      +V +  ++S  SD +  +  + +   CV   +  ++VAT  R    + 
Sbjct: 299 IIPTLPLTIMNTSVILVVKSSCASDNSIRLMTLYNGFSCVIAETKMIYVATVVRFSLCYM 358

Query: 336 RNGAARPPSDVTCVSTSHCT 395
           + GA +P S +  ++  +CT
Sbjct: 359 QMGAMKPSSVIQWLNFPYCT 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,796,547
Number of Sequences: 37544
Number of extensions: 343391
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)