Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0571.Seq
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_58441| Best HMM Match : Lipoxygenase (HMM E-Value=3.4e-15)          29   4.2  
SB_46835| Best HMM Match : Lipoxygenase (HMM E-Value=6.5e-06)          29   4.2  
SB_46460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_15574| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      28   9.8  

>SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2011

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 614  LSTSLFHYKRDPRMLDKH*TFLKYLKSTKHAIYCCNECIHYHRD 745
            L   LF Y  D    D+      + + T  A+YC N+ I+YHRD
Sbjct: 1639 LEARLFEYSTDFLSSDEGEVEYLFRRDTSDALYCYNDDIYYHRD 1682


>SB_58441| Best HMM Match : Lipoxygenase (HMM E-Value=3.4e-15)
          Length = 621

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 520 LNIEYQQINNTSVAITT*TEIFELSEVIKYKHFIRDEAARQSV 392
           LN+  + ++ T  A T+    F    ++ Y  F+ D AAR+ V
Sbjct: 535 LNLPLRTVSETQCAFTSSLGTFRYDRLLDYASFLEDRAARRVV 577


>SB_46835| Best HMM Match : Lipoxygenase (HMM E-Value=6.5e-06)
          Length = 327

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 520 LNIEYQQINNTSVAITT*TEIFELSEVIKYKHFIRDEAARQSV 392
           LN+  + ++ T  A T+    F    ++ Y  F+ D AAR+ V
Sbjct: 241 LNLPLRTVSETQCAFTSSLGTFRYDRLLDYASFLEDRAARRVV 283


>SB_46460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 348 ARPPSDVTCVSTSHCTDCRAASSR 419
           +R PS + C S++HC  CR+ + R
Sbjct: 28  SRCPSSIHCPSSNHCRRCRSIARR 51


>SB_15574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = -3

Query: 431 QTFYTR*SRTAVSAVRGRDTRHI*GRPRCSVPSEGGKATMIGSDKQSRRIQGNTRKETRN 252
           QT+YTR    +        T H    P CS P  GG A  +    +SR+   N+ K  R+
Sbjct: 8   QTYYTRERSNSNPLQFHSGTEHEQVTPPCSPPYNGGSANQLSPIDKSRK---NSPKAKRS 64

Query: 251 K 249
           +
Sbjct: 65  R 65


>SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 466 TEIFELSEVIKYKHFIRDEAARQSVQCEVETHVTSEGGRAAPFRVK 329
           T+IF++   I + H +  EAA ++ Q +    +  E     P RVK
Sbjct: 506 TDIFDIKRAIVHTHLLNPEAACKTGQIKEVERICRESNCYDPERVK 551


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +3

Query: 318  GLSSFTRNGAARPPSDVTCVSTSHCTDCRAASSRIKCLYFITSDNSNISV 467
            G  +F   G   P S VTC+  S C      +    CL     DN N SV
Sbjct: 1395 GSVTFLHTGFCTPCSTVTCLYHSKCFPQADGTGVCICLDQCPPDNQNASV 1444


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,736,091
Number of Sequences: 59808
Number of extensions: 434739
Number of successful extensions: 967
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)