Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0571.Seq
         (784 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070592-1|AAL48063.1|  376|Drosophila melanogaster RE69393p pro...    30   3.1  
AE014296-3192|AAF49128.2|  376|Drosophila melanogaster CG8786-PB...    30   3.1  
U23420-1|AAB03640.1| 1607|Drosophila melanogaster unknown protein.     29   9.5  

>AY070592-1|AAL48063.1|  376|Drosophila melanogaster RE69393p
           protein.
          Length = 376

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 335 SERSSAAALRCDVCLDLALH--*LPCGFI 415
           S  ++AAAL C +CL   +H   LPCG I
Sbjct: 114 SPSAAAAALECPICLQTCIHPARLPCGHI 142


>AE014296-3192|AAF49128.2|  376|Drosophila melanogaster CG8786-PB
           protein.
          Length = 376

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 335 SERSSAAALRCDVCLDLALH--*LPCGFI 415
           S  ++AAAL C +CL   +H   LPCG I
Sbjct: 114 SPSAAAAALECPICLQTCIHPARLPCGHI 142


>U23420-1|AAB03640.1| 1607|Drosophila melanogaster unknown protein.
          Length = 1607

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
 Frame = +3

Query: 153 LIIYMSPYATDTRTVTIRCEASS--GSDVNKSVRFVASFLPCVPLYSARLFVATYHRGLS 326
           + I +S   +DTR    +C  S   G  +N+ ++F+ S   C  L +  L  +T  R  +
Sbjct: 109 IFILLSKLDSDTRQAWAQCAESEEKGVTINRFLKFLTS--RCDTLEAFELTRSTQARRAA 166

Query: 327 SFTRNGAARPPSDVTCVSTSHCTDCRAASSRIKCLYFITSD 449
           + T +    P  +        CT C+      KC  FI  D
Sbjct: 167 T-THHADTHPRRE-----EPKCTSCQQNHQLFKCPQFIALD 201


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,687,061
Number of Sequences: 53049
Number of extensions: 607707
Number of successful extensions: 1145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3613676352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)