Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0571.Seq
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   7.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.8  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 633 TIRGIPGC*ISTRHF*STLKVQNMQFIVVTNVSIITGTFPL 755
           T+R  P   +  R   + LK+ +  + +    +++ GTF L
Sbjct: 407 TLRMYPPVPLIAREIKTDLKLASGDYTIPAGCTVVIGTFKL 447


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 315  RGLSSFTRNGAARPPSDVTCVSTSHCTDCRAASSR 419
            R +S F  +G +   SD++ +S       R  SSR
Sbjct: 1812 RAVSDFIYHGTSSTSSDISPMSEQKSLPRRGRSSR 1846


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 315  RGLSSFTRNGAARPPSDVTCVSTSHCTDCRAASSR 419
            R +S F  +G +   SD++ +S       R  SSR
Sbjct: 1808 RAVSDFIYHGTSSTSSDISPMSEQKSLPRRGRSSR 1842


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,992
Number of Sequences: 438
Number of extensions: 4336
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)