Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0571.Seq
         (784 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25840.2 68415.m03101 tRNA synthetase class I (W and Y) famil...    29   4.6  
At2g25840.1 68415.m03100 tRNA synthetase class I (W and Y) famil...    29   4.6  

>At2g25840.2 68415.m03101 tRNA synthetase class I (W and Y) family
           protein contains Pfam profile: PF00579 tRNA synthetases
           class I (W and Y)
          Length = 412

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +3

Query: 72  IKTLMAYQVNN*IIMVSCVHHSIS*VYLIIYMSPYATDTRTVTIRCEASSGSDVNKSVRF 251
           IK  +A Q     + +   HH+I+  Y    +    TDT  + + C    G DV+K+  F
Sbjct: 86  IKNWVALQDTYETLFIIVDHHAITLPYDTRQLGKATTDTAALYLAC----GIDVSKASVF 141

Query: 252 VASFLP 269
           V S +P
Sbjct: 142 VQSHVP 147


>At2g25840.1 68415.m03100 tRNA synthetase class I (W and Y) family
           protein contains Pfam profile: PF00579 tRNA synthetases
           class I (W and Y)
          Length = 408

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +3

Query: 72  IKTLMAYQVNN*IIMVSCVHHSIS*VYLIIYMSPYATDTRTVTIRCEASSGSDVNKSVRF 251
           IK  +A Q     + +   HH+I+  Y    +    TDT  + + C    G DV+K+  F
Sbjct: 86  IKNWVALQDTYETLFIIVDHHAITLPYDTRQLGKATTDTAALYLAC----GIDVSKASVF 141

Query: 252 VASFLP 269
           V S +P
Sbjct: 142 VQSHVP 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,876,431
Number of Sequences: 28952
Number of extensions: 290042
Number of successful extensions: 604
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)