Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0570X.Seq
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   4.1  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    25   7.1  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    25   7.1  

>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 243 LLGIPRLWGIIATPNPQHEGVSAGSPGL*ARENM 142
           L G+P ++G++  P    EG++    G    EN+
Sbjct: 292 LYGVPSMYGVVTLPYSVREGINIFLDGHIPTENL 325


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 169 PGPLGQGEHADSFSVARVRPRTSKGI 92
           PG LG    + +  +  V+PRT +G+
Sbjct: 161 PGTLGSRSRSTTSFIRNVKPRTGEGL 186


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 232 SSFMGDNCNPKSPARRSFSGFPGPLGQGEHADSFS 128
           SSF  D+ +PK    +S++  PG   + E ADSF+
Sbjct: 310 SSFNSDSHSPKDYISQSYTNEPGL--KKESADSFN 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,828
Number of Sequences: 5004
Number of extensions: 37425
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)