Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0570X.Seq
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928...    29   1.7  
03_02_0759 + 10959028-10959135,10959238-10959807                       27   7.0  
07_03_1107 - 24024387-24024497,24025799-24026410                       27   9.2  
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600...    27   9.2  

>02_05_1011 +
           33487670-33487958,33490794-33492100,33492541-33492853,
           33493190-33494247
          Length = 988

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 164 PGEPAETPSCWGFGVAIIPHKRGIPNKR 247
           PGEP +TP  W    + +P +  +P KR
Sbjct: 443 PGEPRDTPRGWTVSPSGLPLRVSVPTKR 470


>03_02_0759 + 10959028-10959135,10959238-10959807
          Length = 225

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -1

Query: 243 LLGIPRLWGIIATPNPQHEGVSAGSPGL*ARENMLIPSV*RACGP 109
           LL I R  G  A P+  H  ++A  PG  A E +  PS+  AC P
Sbjct: 138 LLSI-RAGGGDAAPSAAHMPIAAIRPGSTAVERVSPPSILSACSP 181


>07_03_1107 - 24024387-24024497,24025799-24026410
          Length = 240

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 202 KSPARRSFSGFPGPLGQGEHADS 134
           K+PA  S +  PGP G G  ADS
Sbjct: 181 KAPAASSTADAPGPAGDGVAADS 203


>01_06_0090 +
           26358051-26359157,26359582-26359701,26359968-26360099,
           26360194-26360375,26360488-26360602,26362001-26362135,
           26362261-26362395
          Length = 641

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 205 PKSPARRSFSGFPGPLGQGEHADSFS 128
           P++P R S SG P P G    A SF+
Sbjct: 20  PETPGRGSSSGSPAPGGSASKAVSFA 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,682,547
Number of Sequences: 37544
Number of extensions: 278434
Number of successful extensions: 492
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)