Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0570X.Seq
(450 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M69008-1|AAA52754.1| 623|Homo sapiens alpha-1 type XIII collage... 31 2.4
M59217-1|AAA51685.1| 584|Homo sapiens alpha-1 type XIII collage... 31 2.4
AL138925-3|CAI15452.1| 683|Homo sapiens collagen type XIII alph... 31 2.4
AL138925-2|CAI15451.2| 695|Homo sapiens collagen type XIII alph... 31 2.4
AL138925-1|CAI15450.1| 717|Homo sapiens collagen type XIII alph... 31 2.4
AJ293624-1|CAC00688.1| 717|Homo sapiens type XIII collagen prot... 31 2.4
U29175-1|AAB40977.1| 1647|Homo sapiens transcriptional activator... 30 4.2
D26156-1|BAA05143.1| 1647|Homo sapiens transcriptional activator... 30 4.2
BC150298-1|AAI50299.1| 1647|Homo sapiens SWI/SNF related, matrix... 30 4.2
BC139924-1|AAI39925.1| 584|Homo sapiens SMARCA4 protein protein. 30 4.2
BC139917-1|AAI39918.1| 584|Homo sapiens SMARCA4 protein protein. 30 4.2
AF254822-2|AAG24789.1| 1647|Homo sapiens SMARCA4 isoform 1 protein. 30 4.2
AF254822-1|AAG24790.1| 1679|Homo sapiens SMARCA4 isoform 2 protein. 30 4.2
AB209313-1|BAD92550.1| 1164|Homo sapiens SWI/SNF-related matrix-... 30 4.2
BC112273-1|AAI12274.1| 830|Homo sapiens kinesin family member 7... 29 7.3
BC112271-1|AAI12272.1| 830|Homo sapiens kinesin family member 7... 29 7.3
BC104044-1|AAI04045.1| 830|Homo sapiens kinesin family member 7... 29 7.3
BC040878-1|AAH40878.1| 468|Homo sapiens KIF7 protein protein. 29 7.3
AY358384-1|AAQ88750.1| 830|Homo sapiens EQYK340 protein. 29 7.3
L22548-1|AAA51864.1| 684|Homo sapiens collagen type XVIII alpha... 29 9.7
>M69008-1|AAA52754.1| 623|Homo sapiens alpha-1 type XIII collagen
protein.
Length = 623
Score = 30.7 bits (66), Expect = 2.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 229 SFMGDNCNPKSPARRSFSGFPGPLG 155
S +G P P R F GFPGP+G
Sbjct: 61 SIIGPRGPPGQPGTRGFPGFPGPIG 85
>M59217-1|AAA51685.1| 584|Homo sapiens alpha-1 type XIII collagen
protein.
Length = 584
Score = 30.7 bits (66), Expect = 2.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 229 SFMGDNCNPKSPARRSFSGFPGPLG 155
S +G P P R F GFPGP+G
Sbjct: 71 SIIGPRGPPGQPGTRGFPGFPGPIG 95
>AL138925-3|CAI15452.1| 683|Homo sapiens collagen type XIII alpha 1
protein.
Length = 683
Score = 30.7 bits (66), Expect = 2.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 229 SFMGDNCNPKSPARRSFSGFPGPLG 155
S +G P P R F GFPGP+G
Sbjct: 154 SIIGPRGPPGQPGTRGFPGFPGPIG 178
>AL138925-2|CAI15451.2| 695|Homo sapiens collagen type XIII alpha 1
protein.
Length = 695
Score = 30.7 bits (66), Expect = 2.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 229 SFMGDNCNPKSPARRSFSGFPGPLG 155
S +G P P R F GFPGP+G
Sbjct: 154 SIIGPRGPPGQPGTRGFPGFPGPIG 178
>AL138925-1|CAI15450.1| 717|Homo sapiens collagen type XIII alpha 1
protein.
Length = 717
Score = 30.7 bits (66), Expect = 2.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 229 SFMGDNCNPKSPARRSFSGFPGPLG 155
S +G P P R F GFPGP+G
Sbjct: 154 SIIGPRGPPGQPGTRGFPGFPGPIG 178
>AJ293624-1|CAC00688.1| 717|Homo sapiens type XIII collagen
protein.
Length = 717
Score = 30.7 bits (66), Expect = 2.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 229 SFMGDNCNPKSPARRSFSGFPGPLG 155
S +G P P R F GFPGP+G
Sbjct: 154 SIIGPRGPPGQPGTRGFPGFPGPIG 178
>U29175-1|AAB40977.1| 1647|Homo sapiens transcriptional activator
protein.
Length = 1647
Score = 29.9 bits (64), Expect = 4.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 205 PKSPARRSFSGFPGPLGQGEHADS 134
P SP + G+P PLG EHA S
Sbjct: 109 PPSPMDQHSQGYPSPLGGSEHASS 132
>D26156-1|BAA05143.1| 1647|Homo sapiens transcriptional activator
hSNF2b protein.
Length = 1647
Score = 29.9 bits (64), Expect = 4.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 205 PKSPARRSFSGFPGPLGQGEHADS 134
P SP + G+P PLG EHA S
Sbjct: 109 PPSPMDQHSQGYPSPLGGSEHASS 132
>BC150298-1|AAI50299.1| 1647|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 1647
Score = 29.9 bits (64), Expect = 4.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 205 PKSPARRSFSGFPGPLGQGEHADS 134
P SP + G+P PLG EHA S
Sbjct: 109 PPSPMDQHSQGYPSPLGGSEHASS 132
>BC139924-1|AAI39925.1| 584|Homo sapiens SMARCA4 protein protein.
Length = 584
Score = 29.9 bits (64), Expect = 4.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 205 PKSPARRSFSGFPGPLGQGEHADS 134
P SP + G+P PLG EHA S
Sbjct: 109 PPSPMDQHSQGYPSPLGGSEHASS 132
>BC139917-1|AAI39918.1| 584|Homo sapiens SMARCA4 protein protein.
Length = 584
Score = 29.9 bits (64), Expect = 4.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 205 PKSPARRSFSGFPGPLGQGEHADS 134
P SP + G+P PLG EHA S
Sbjct: 109 PPSPMDQHSQGYPSPLGGSEHASS 132
>AF254822-2|AAG24789.1| 1647|Homo sapiens SMARCA4 isoform 1 protein.
Length = 1647
Score = 29.9 bits (64), Expect = 4.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 205 PKSPARRSFSGFPGPLGQGEHADS 134
P SP + G+P PLG EHA S
Sbjct: 109 PPSPMDQHSQGYPSPLGGSEHASS 132
>AF254822-1|AAG24790.1| 1679|Homo sapiens SMARCA4 isoform 2 protein.
Length = 1679
Score = 29.9 bits (64), Expect = 4.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 205 PKSPARRSFSGFPGPLGQGEHADS 134
P SP + G+P PLG EHA S
Sbjct: 109 PPSPMDQHSQGYPSPLGGSEHASS 132
>AB209313-1|BAD92550.1| 1164|Homo sapiens SWI/SNF-related
matrix-associated actin-dependent regulator of chromatin
a4 var protein.
Length = 1164
Score = 29.9 bits (64), Expect = 4.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 205 PKSPARRSFSGFPGPLGQGEHADS 134
P SP + G+P PLG EHA S
Sbjct: 66 PPSPMDQHSQGYPSPLGGSEHASS 89
>BC112273-1|AAI12274.1| 830|Homo sapiens kinesin family member 7
protein.
Length = 830
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 99 LDVLGRTRATLKESACSPWPKGPGNPLKLLRAGDLGLQLSPINE 230
++ +G +R K S CS + PGN +L A +L L LSP+ E
Sbjct: 701 VNAVGHSRGGEKRSLCSEGRQAPGNEDELHLAPEL-LWLSPLTE 743
>BC112271-1|AAI12272.1| 830|Homo sapiens kinesin family member 7
protein.
Length = 830
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 99 LDVLGRTRATLKESACSPWPKGPGNPLKLLRAGDLGLQLSPINE 230
++ +G +R K S CS + PGN +L A +L L LSP+ E
Sbjct: 701 VNAVGHSRGGEKRSLCSEGRQAPGNEDELHLAPEL-LWLSPLTE 743
>BC104044-1|AAI04045.1| 830|Homo sapiens kinesin family member 7
protein.
Length = 830
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 99 LDVLGRTRATLKESACSPWPKGPGNPLKLLRAGDLGLQLSPINE 230
++ +G +R K S CS + PGN +L A +L L LSP+ E
Sbjct: 701 VNAVGHSRGGEKRSLCSEGRQAPGNEDELHLAPEL-LWLSPLTE 743
>BC040878-1|AAH40878.1| 468|Homo sapiens KIF7 protein protein.
Length = 468
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 99 LDVLGRTRATLKESACSPWPKGPGNPLKLLRAGDLGLQLSPINE 230
++ +G +R K S CS + PGN +L A +L L LSP+ E
Sbjct: 339 VNAVGHSRGGEKRSLCSEGRQAPGNEDELHLAPEL-LWLSPLTE 381
>AY358384-1|AAQ88750.1| 830|Homo sapiens EQYK340 protein.
Length = 830
Score = 29.1 bits (62), Expect = 7.3
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 99 LDVLGRTRATLKESACSPWPKGPGNPLKLLRAGDLGLQLSPINE 230
++ +G +R K S CS + PGN +L A +L L LSP+ E
Sbjct: 701 VNAVGHSRGGEKRSLCSEGRQAPGNEDELHLAPEL-LWLSPLTE 743
>L22548-1|AAA51864.1| 684|Homo sapiens collagen type XVIII alpha 1
protein.
Length = 684
Score = 28.7 bits (61), Expect = 9.7
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -3
Query: 205 PKSPARRSFSGFPGPLG-QGEHADSFSVARVRPRTSKG 95
P RR F+GFPGP G +G + P+ KG
Sbjct: 73 PGPEGRRGFAGFPGPAGPKGNLGSKGELGSPGPKGEKG 110
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,741,860
Number of Sequences: 237096
Number of extensions: 1518718
Number of successful extensions: 2977
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2977
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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