Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0570X.Seq
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    27   6.3  

>U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical
           protein K08D10.10 protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 282 FYKTAVGTNGLII*LGLPTENPLLQGR 362
           FY +A+G  GL + + L + NPL+ G+
Sbjct: 258 FYDSAIGGEGLFLPIALYSANPLVSGK 284


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 243 LLGIPRLWGIIATPNPQHEGVSAGSPGL*ARENM 142
           L G+P ++G++  P+   EG++    G    ENM
Sbjct: 300 LYGVPGVYGVVTLPSGVREGINMFLEGFIRTENM 333


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
 Frame = -3

Query: 217 DNCNPKSPARRSFSGFPGPLGQ----GE--HADSFSVA 122
           ++C   +PAR+   G PGP GQ    GE  H+D+ S A
Sbjct: 190 NDCQTCAPARQGAPGPPGPAGQPGQPGEPGHSDTSSTA 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,438,511
Number of Sequences: 27780
Number of extensions: 224013
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)