Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0570X.Seq
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.7  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    21   8.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   8.2  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    21   8.2  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 135 ESACSPWPKGPGNPLKLLRA 194
           + + SP P+ P NP++ L+A
Sbjct: 13  DRSTSPLPRKPVNPVQELKA 32


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 208 NPKSPARRSFSGFPG 164
           N   P RR F  FPG
Sbjct: 25  NVPQPGRRPFPTFPG 39


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = -1

Query: 201 NPQHEGVSAGSPGL*ARENMLIPSV*RACGPGHLRASQTCYCSISCGSKTPVP 43
           +PQH G SA +       + + P V  A    H +  Q    +    + + VP
Sbjct: 68  SPQHSGSSASTSPAARTTSSMYPYVSAAAAHHHHQQQQAVAAAAFGATSSMVP 120


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 208 NPKSPARRSFSGFPG 164
           N   P RR F  FPG
Sbjct: 11  NVPQPGRRPFPTFPG 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,422
Number of Sequences: 438
Number of extensions: 2936
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)