Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0569.Seq
(786 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 151 4e-37
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 151 4e-37
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 151 4e-37
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 50 2e-06
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 39 0.005
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 36 0.025
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 36 0.025
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 30 2.2
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 30 2.2
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 30 2.2
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 3.8
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 5.0
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 8.7
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 151 bits (367), Expect = 4e-37
Identities = 70/92 (76%), Positives = 77/92 (83%)
Frame = -3
Query: 784 APRQHHY*VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADF 605
AP+ VKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F
Sbjct: 247 APQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTF 306
Query: 604 TAQVIVLNHPGQISNGYTPVLDCHTAHIACKF 509
AQVI++NHPGQISNGYTPVLDCHTAHIACKF
Sbjct: 307 HAQVIIMNHPGQISNGYTPVLDCHTAHIACKF 338
Score = 127 bits (307), Expect = 8e-30
Identities = 61/94 (64%), Positives = 73/94 (77%), Gaps = 1/94 (1%)
Frame = -2
Query: 533 HCPH-CLQISEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 357
H H + +E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGR
Sbjct: 330 HTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGR 389
Query: 356 FAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 255
FAVRDMRQTVAVGVIK+V + GKVTK+A+K
Sbjct: 390 FAVRDMRQTVAVGVIKSVEKSDGSSGKVTKSAQK 423
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 151 bits (367), Expect = 4e-37
Identities = 70/92 (76%), Positives = 77/92 (83%)
Frame = -3
Query: 784 APRQHHY*VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADF 605
AP+ VKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F
Sbjct: 281 APQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTF 340
Query: 604 TAQVIVLNHPGQISNGYTPVLDCHTAHIACKF 509
AQVI++NHPGQISNGYTPVLDCHTAHIACKF
Sbjct: 341 HAQVIIMNHPGQISNGYTPVLDCHTAHIACKF 372
Score = 127 bits (307), Expect = 8e-30
Identities = 61/94 (64%), Positives = 73/94 (77%), Gaps = 1/94 (1%)
Frame = -2
Query: 533 HCPH-CLQISEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 357
H H + +E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGR
Sbjct: 364 HTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGR 423
Query: 356 FAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 255
FAVRDMRQTVAVGVIK+V + GKVTK+A+K
Sbjct: 424 FAVRDMRQTVAVGVIKSVEKSDGSSGKVTKSAQK 457
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 151 bits (367), Expect = 4e-37
Identities = 70/92 (76%), Positives = 77/92 (83%)
Frame = -3
Query: 784 APRQHHY*VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADF 605
AP+ VKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F
Sbjct: 281 APQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTF 340
Query: 604 TAQVIVLNHPGQISNGYTPVLDCHTAHIACKF 509
AQVI++NHPGQISNGYTPVLDCHTAHIACKF
Sbjct: 341 HAQVIIMNHPGQISNGYTPVLDCHTAHIACKF 372
Score = 127 bits (307), Expect = 8e-30
Identities = 61/94 (64%), Positives = 73/94 (77%), Gaps = 1/94 (1%)
Frame = -2
Query: 533 HCPH-CLQISEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGR 357
H H + +E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGR
Sbjct: 364 HTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGR 423
Query: 356 FAVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 255
FAVRDMRQTVAVGVIK+V + GKVTK+A+K
Sbjct: 424 FAVRDMRQTVAVGVIKSVEKSDGSSGKVTKSAQK 457
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = -2
Query: 491 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 315
+D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527
Query: 314 IKAV 303
+K V
Sbjct: 528 LKVV 531
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/67 (34%), Positives = 38/67 (56%)
Frame = -3
Query: 727 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTP 548
+ V GDN+ F +K + EL+ G++ S ++ K F A+V+VL H I++GY+
Sbjct: 392 ERVVAGDNIKFKLKGIEENELQGGFII-CSPDSLAKTGRVFDAEVLVLEHRSIIASGYSC 450
Query: 547 VLDCHTA 527
VL +A
Sbjct: 451 VLHIQSA 457
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = -3
Query: 760 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 581
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 580 HPGQISNGYTPVL 542
HP I Y +L
Sbjct: 479 HPTTIKPNYQAML 491
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 36.3 bits (80), Expect = 0.025
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = -2
Query: 491 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 312
+++ G+ + P+ I G +A+V + + +E+F LGR R T+A G++
Sbjct: 526 INKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIV 585
Query: 311 KAV 303
+ V
Sbjct: 586 EKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 36.3 bits (80), Expect = 0.025
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = -2
Query: 491 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 312
+++ G+ + P+ I G +A+V + + +E+F LGR R T+A G++
Sbjct: 544 INKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIV 603
Query: 311 KAV 303
+ V
Sbjct: 604 EKV 606
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = -3
Query: 760 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 581
+ +E + + +A PGD +G ++ + K++RRG V + + K AQ+ VL
Sbjct: 300 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLK 358
Query: 580 HPGQISNGYTPVLDCHTAHI 521
TP+ + + H+
Sbjct: 359 E--SEGGAKTPIANYFSEHV 376
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = -3
Query: 760 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 581
+ +E + + +A PGD +G ++ + K++RRG V + + K AQ+ VL
Sbjct: 301 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLK 359
Query: 580 HPGQISNGYTPVLDCHTAHI 521
TP+ + + H+
Sbjct: 360 E--SEGGAKTPIANYFSEHV 377
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = -3
Query: 760 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 581
+ +E + + +A PGD +G ++ + K++RRG V + + K AQ+ VL
Sbjct: 301 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLK 359
Query: 580 HPGQISNGYTPVLDCHTAHI 521
TP+ + + H+
Sbjct: 360 E--SEGGAKTPIANYFSEHV 377
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 163 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 56
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -3
Query: 760 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 581
V S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLC 508
Query: 580 H 578
H
Sbjct: 509 H 509
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 594 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 725
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,778,833
Number of Sequences: 27780
Number of extensions: 404667
Number of successful extensions: 1183
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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