Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0567.Seq
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 46 8e-06
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 36 0.009
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 2.3
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 3.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 3.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 3.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 3.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 3.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 3.0
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 27 3.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 3.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 3.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 3.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 3.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 3.0
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 5.3
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 7.0
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 45.6 bits (103), Expect = 8e-06
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +1
Query: 55 SVVPAWTRFWQCLRRYRDSREAFPHLVNAGKYSTTFFVVLFATL 186
+ +P R +QC RRY DS ++FPHLVNA KY +F +L
Sbjct: 472 TTLPGILRVFQCFRRYSDSLKSFPHLVNALKYIFNILAQMFLSL 515
Score = 32.3 bits (70), Expect = 0.081
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 276 YTYTWDVKMDWGLFSCGPSAENKFLREEIVYSPGSYYFAIVEDFVLR 416
++YTWD+ MDW L +F I+ Y A++ +F++R
Sbjct: 538 FSYTWDILMDWNLL-VRKDGRWQFREHRILKQLWPYIIAMILNFIVR 583
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 35.5 bits (78), Expect = 0.009
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Frame = +3
Query: 276 YTYTWDVKMDWGL--FSCGPSAEN-KFLREEIVYSPGSYYFAIVE--DFVLRFIWTVSFV 440
Y++ WDV MDW L F S +N KF + ++ FA+V DFVLR W V V
Sbjct: 259 YSFWWDVSMDWSLPFFKQPLSIQNWKFGVRRLF---PTFTFAVVSAIDFVLRMAWVVR-V 314
Query: 441 LTENK--YVGSETMTSILAPLEVF 506
L E++ + ++ I+ LEVF
Sbjct: 315 LPEHQSAFFTTDFGIFIMQFLEVF 338
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 300 MDWGLFSCGPSAENKFLREEIVYSPGSYYFAIVEDF 407
++W + S P N +L E+ Y P S Y + F
Sbjct: 39 LEWSVVSTDPLQANVWLINEVEYPPTSRYIMTINTF 74
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 470 NYDLYIGSPGSVQRFIWNFFRLENEHLNNCGKFRAVRDISVAPLDSSDQADIIRMMDH 643
NY+L + P S++ + F H+++ K+R +++ A +D SD I+ +++H
Sbjct: 1232 NYELDL--PDSIKHMFSSTF-----HVSHLEKYRHNSELNYATIDESDIGTILHILEH 1282
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 470 NYDLYIGSPGSVQRFIWNFFRLENEHLNNCGKFRAVRDISVAPLDSSDQADIIRMMDH 643
NY+L + P S++ + F H+++ K+R +++ A +D SD I+ +++H
Sbjct: 1232 NYELDL--PDSIKHMFSSTF-----HVSHLEKYRHNSELNYATIDESDIGTILHILEH 1282
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 470 NYDLYIGSPGSVQRFIWNFFRLENEHLNNCGKFRAVRDISVAPLDSSDQADIIRMMDH 643
NY+L + P S++ + F H+++ K+R +++ A +D SD I+ +++H
Sbjct: 1232 NYELDL--PDSIKHMFSSTF-----HVSHLEKYRHNSELNYATIDESDIGTILHILEH 1282
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 470 NYDLYIGSPGSVQRFIWNFFRLENEHLNNCGKFRAVRDISVAPLDSSDQADIIRMMDH 643
NY+L + P S++ + F H+++ K+R +++ A +D SD I+ +++H
Sbjct: 1232 NYELDL--PDSIKHMFSSTF-----HVSHLEKYRHNSELNYATIDESDIGTILHILEH 1282
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 470 NYDLYIGSPGSVQRFIWNFFRLENEHLNNCGKFRAVRDISVAPLDSSDQADIIRMMDH 643
NY+L + P S++ + F H+++ K+R +++ A +D SD I+ +++H
Sbjct: 1232 NYELDL--PDSIKHMFSSTF-----HVSHLEKYRHNSELNYATIDESDIGTILHILEH 1282
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 470 NYDLYIGSPGSVQRFIWNFFRLENEHLNNCGKFRAVRDISVAPLDSSDQADIIRMMDH 643
NY+L + P S++ + F H+++ K+R +++ A +D SD I+ +++H
Sbjct: 1232 NYELDL--PDSIKHMFSSTF-----HVSHLEKYRHNSELNYATIDESDIGTILHILEH 1282
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 276 YTYTWDVKMDWGL-FSCGPSAENKFLREEIVYSPGSYYFAIVEDFVLRFIWTV 431
YT+ WDV +DW + F S +K +Y+ G + +F+LR W++
Sbjct: 301 YTFLWDVFIDWRIRFPFHKSINHKRF-PMFIYAIGCFI-----NFILRVTWSM 347
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 470 NYDLYIGSPGSVQRFIWNFFRLENEHLNNCGKFRAVRDISVAPLDSSDQADIIRMMDH 643
NY+L + P S++ + F H+++ K+R +++ A +D SD I+ +++H
Sbjct: 1232 NYELDL--PDSIKHMFSSTF-----HVSHLEKYRHNSELNYATIDESDIGTILHILEH 1282
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 470 NYDLYIGSPGSVQRFIWNFFRLENEHLNNCGKFRAVRDISVAPLDSSDQADIIRMMDH 643
NY+L + P S++ + F H+++ K+R +++ A +D SD I+ +++H
Sbjct: 1232 NYELDL--PDSIKHMFSSTF-----HVSHLEKYRHNSELNYATIDESDIGTILHILEH 1282
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 470 NYDLYIGSPGSVQRFIWNFFRLENEHLNNCGKFRAVRDISVAPLDSSDQADIIRMMDH 643
NY+L + P S++ + F H+++ K+R +++ A +D SD I+ +++H
Sbjct: 1232 NYELDL--PDSIKHMFSSTF-----HVSHLEKYRHNSELNYATIDESDIGTILHILEH 1282
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 470 NYDLYIGSPGSVQRFIWNFFRLENEHLNNCGKFRAVRDISVAPLDSSDQADIIRMMDH 643
NY+L + P S++ + F H+++ K+R +++ A +D SD I+ +++H
Sbjct: 1232 NYELDL--PDSIKHMFSSTF-----HVSHLEKYRHNSELNYATIDESDIGTILHILEH 1282
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 470 NYDLYIGSPGSVQRFIWNFFRLENEHLNNCGKFRAVRDISVAPLDSSDQADIIRMMDH 643
NY+L + P S++ + F H+++ K+R +++ A +D SD I+ +++H
Sbjct: 1232 NYELDL--PDSIKHMFSSTF-----HVSHLEKYRHNSELNYATIDESDIGTILHILEH 1282
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 435 TKQSI*NVTRNPLLSQSSKTPDCRR 361
TKQ+I T N LS+S TPD ++
Sbjct: 230 TKQNIEATTENDALSESISTPDIQK 254
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 117 LPAVPVPAQTLPEPGPGRDHAHDRAAQH 34
LPA+ PAQ +P+ P H+H QH
Sbjct: 580 LPAMADPAQNVPQQLPPPIHSHLSDDQH 607
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,467
Number of Sequences: 5004
Number of extensions: 56606
Number of successful extensions: 209
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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