Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0567.Seq
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1165 + 34630369-34630431,34630771-34630855,34631212-346313... 50 2e-06
01_01_0069 + 536787-537068,537193-537493,537528-537581,538848-53... 46 3e-05
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103... 42 4e-04
04_04_1438 - 33609242-33609349,33609571-33609663,33609840-336098... 31 0.78
01_01_0177 + 1512181-1512286,1512373-1513280 29 4.2
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 28 7.3
03_05_0883 + 28483429-28484385,28485090-28485398 28 7.3
02_03_0106 + 15292869-15296138 28 9.6
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126... 28 9.6
>02_05_1165 +
34630369-34630431,34630771-34630855,34631212-34631332,
34631588-34631831,34631922-34632026,34632110-34632154,
34632243-34632395,34632481-34632762,34632844-34632980,
34633065-34633152
Length = 440
Score = 50.4 bits (115), Expect = 2e-06
Identities = 22/40 (55%), Positives = 28/40 (70%)
Frame = +2
Query: 467 RNYDLYIGSPGSVQRFIWNFFRLENEHLNNCGKFRAVRDI 586
R D + S ++R WNF+RLENEHLNN GKFRAV+ +
Sbjct: 391 RLLDFSLASLEIIRRGHWNFYRLENEHLNNVGKFRAVKTV 430
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +3
Query: 276 YTYTWDVKMDWGLFSCGPSAENKFLREEIVYSPGS-YYFAIVEDFVLRFIWTVSFVLTEN 452
Y WD DWG + P ++N++LR E++ S YY +++ + LR WT S +
Sbjct: 328 YQLYWDFVKDWGFLN--PKSKNRWLRNELILKNKSIYYVSMMLNLALRLAWTESVMKIHI 385
Query: 453 KYVGSETMTSILAPLEV 503
V S + LA LE+
Sbjct: 386 GKVESRLLDFSLASLEI 402
Score = 35.1 bits (77), Expect = 0.063
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 49 VVSVVPAWTRFWQCLRRYRDSREAFPHLVNAGKY 150
V+S +P + R QCLRRY + L NAGKY
Sbjct: 260 VISFLPYFWRALQCLRRYLEEGHDINQLANAGKY 293
>01_01_0069 +
536787-537068,537193-537493,537528-537581,538848-539241,
539345-539595,539678-539798,539893-540133,540341-540445,
540571-540615,540738-540890,541132-541410,541705-541841,
541975-542017,542228-542329
Length = 835
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +2
Query: 503 VQRFIWNFFRLENEHLNNCGKFRA 574
++R WNF+RLENEHLNN GKFRA
Sbjct: 779 IRRGHWNFYRLENEHLNNAGKFRA 802
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 276 YTYTWDVKMDWGLFSCGPSAENKFLREEIVYSPGS-YYFAIVEDFVLRFIWTVSFVLTEN 452
Y WD DWGL P+++N +LR +++ S YY ++ + VLR W + +
Sbjct: 704 YQLYWDFVKDWGLLQ--PNSKNPWLRNDLILKSKSIYYLSMGLNLVLRLAWLQTVIHPNF 761
Query: 453 KYVGSETMTSILAPLEV 503
+ S + LA LEV
Sbjct: 762 GSLDSRVTSFFLAALEV 778
Score = 32.3 bits (70), Expect = 0.45
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 52 VSVVPAWTRFWQCLRRYRDSREAFPHLVNAGKY 150
VS +P + R QC RR+ D + HLVN GKY
Sbjct: 638 VSFLPYYWRAMQCARRWFDESDT-GHLVNLGKY 669
>12_02_0979 -
25009721-25009975,25010058-25010127,25010216-25010381,
25010501-25010651,25010843-25010890,25011172-25011225,
25011400-25011513,25012666-25012782,25012899-25012991,
25013085-25013123,25013990-25014055
Length = 390
Score = 42.3 bits (95), Expect = 4e-04
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +1
Query: 49 VVSVVPAWTRFWQCLRRYRDSREAFPHLVNAGKYSTTFFVVLFATLKTLNNHKYPDS--S 222
+V V P R +QCLR+Y+D++E L+NA KYST V+ + LK H +PD S
Sbjct: 199 LVLVFPYLCRLFQCLRQYKDTKEK-TCLLNALKYSTAVPVIFLSALK---YHVFPDKWVS 254
Query: 223 FDNP 234
F P
Sbjct: 255 FYRP 258
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 276 YTYTWDVKMDWGLFSCGP--SAENKFLREEIVYSP-GSYYFAIVEDFVLRFIWT 428
Y++ WD+K DW L +N ++Y YY+ + + VLR WT
Sbjct: 270 YSFYWDIKRDWDLSILTRIFMFKNPSTWTNLLYGQIWVYYWVLASNLVLRCTWT 323
>04_04_1438 -
33609242-33609349,33609571-33609663,33609840-33609884,
33610000-33610055,33610362-33610468,33610605-33610806,
33611068-33611122,33611129-33611167,33611664-33611725,
33611875-33611988,33612618-33612627,33612750-33612835,
33613008-33613377
Length = 448
Score = 31.5 bits (68), Expect = 0.78
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +1
Query: 505 SAFHLEFLPSRERAPEQLRQVPRRPGHLRGAPGLLRPGRHHPDD-GPSRWSYKQINEEEK 681
SA H PSR A LR P R G+P +LR P P+ + EEE
Sbjct: 12 SAAHRRLPPSRSAASSILR-APNRGRLCPGSPSVLRASSSSPSSPQPTAGGDEGEEEEEG 70
Query: 682 RKKDKGNRPSAAAEEGID 735
R+ K + A EG D
Sbjct: 71 RRLSKQSSWEAKDSEGDD 88
>01_01_0177 + 1512181-1512286,1512373-1513280
Length = 337
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 138 VDEMRERLPAVPVPAQTLPEPGPGRDHAHDRA 43
V +RER P P+PA+ G R H D A
Sbjct: 272 VGSLRERYPGYPIPAECGSHKGDDRAHKMDTA 303
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +1
Query: 529 PSRERAPEQLRQVPRRPGHLRGAPGLLRPGRHHPDDGPSRWSYKQINEEEKRKKDKGNRP 708
P + P Q PR G LR R R DD + S + ++ R+ D+GNRP
Sbjct: 30 PEQRELPRQATPPPRGTGDLRDQINGRRKARRTRDD--ANRSRRHVS---SRRHDRGNRP 84
Query: 709 S 711
+
Sbjct: 85 N 85
>03_05_0883 + 28483429-28484385,28485090-28485398
Length = 421
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = -1
Query: 258 DSEPRVQKRIVERRIWIFMIVQSLQRSE*NHEKRGRVLPGVDEMRERLPAVPVPAQTLPE 79
+ E RV + +RR +F + + N EKR R+ + LP +P+P P
Sbjct: 337 EREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRAAALPPLPLPRHQHPP 396
Query: 78 PGPGR 64
P P R
Sbjct: 397 PPPPR 401
>02_03_0106 + 15292869-15296138
Length = 1089
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 508 AFHLEFLPSRERAPEQLRQVPRRPGHLRGAPGL 606
+ H++F P + PE L+ V R H+ GA L
Sbjct: 907 SLHIQFCPKLKALPEGLKNVSLRELHVEGAYSL 939
>01_07_0238 + 42209407-42209964,42210039-42210561,42212577-42212665,
42212981-42213191,42213265-42213446,42213573-42213812,
42214691-42214878,42215230-42215323,42215407-42215463,
42215552-42215686,42216460-42216525,42216745-42216858,
42217849-42218010,42218093-42218221,42218323-42218424,
42219428-42219504,42219600-42219957
Length = 1094
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 610 RPGRHHPDDGPSRWSYKQINEEEKRKKDKGNRPSAAAEEGIDTRSSIRTRLSSK 771
R G H+P DG + + KR+K + + +EG TR+ R+ + K
Sbjct: 952 RKGNHNPADGAESEAQQPTQHAAKRRK-RSDSDVGTGQEGTHTRAPSRSLPAGK 1004
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,074,955
Number of Sequences: 37544
Number of extensions: 396401
Number of successful extensions: 1577
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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