Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0567.Seq
(783 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26490| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 1e-15
SB_46103| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 2e-15
SB_6608| Best HMM Match : EXS (HMM E-Value=0.0021) 71 1e-12
SB_11621| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.012
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076) 31 1.1
SB_54716| Best HMM Match : S-antigen (HMM E-Value=1.8) 30 1.8
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_44248| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_30272| Best HMM Match : GDI (HMM E-Value=0) 28 7.4
SB_13890| Best HMM Match : Herpes_UL14 (HMM E-Value=5.6) 28 7.4
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 28 7.4
SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07) 28 9.8
SB_31473| Best HMM Match : HATPase_c (HMM E-Value=0.0029) 28 9.8
>SB_26490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 80.6 bits (190), Expect = 1e-15
Identities = 34/77 (44%), Positives = 49/77 (63%)
Frame = +3
Query: 276 YTYTWDVKMDWGLFSCGPSAENKFLREEIVYSPGSYYFAIVEDFVLRFIWTVSFVLTENK 455
YT TWD+KMDWGL ++N+FLR+E VY YY A+ ED V RF+WT++ +++
Sbjct: 475 YTLTWDIKMDWGLLDKDAPSDNRFLRDETVYKKVFYYLAMFEDLVFRFLWTLTVSVSDAN 534
Query: 456 YVGSETMTSILAPLEVF 506
+ SE + L+ EVF
Sbjct: 535 ILNSELLKLCLSVCEVF 551
Score = 80.6 bits (190), Expect = 1e-15
Identities = 34/50 (68%), Positives = 41/50 (82%)
Frame = +2
Query: 506 QRFIWNFFRLENEHLNNCGKFRAVRDISVAPLDSSDQADIIRMMDHPDGV 655
+RF+WNFFRLENEHLNNCG+FRAVRDIS+ P DS Q ++ RMMD G+
Sbjct: 552 RRFVWNFFRLENEHLNNCGQFRAVRDISIMPHDSHHQVNLERMMDDTRGL 601
>SB_46103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 80.2 bits (189), Expect = 2e-15
Identities = 34/49 (69%), Positives = 40/49 (81%)
Frame = +2
Query: 509 RFIWNFFRLENEHLNNCGKFRAVRDISVAPLDSSDQADIIRMMDHPDGV 655
RF+WNFFRLENEHLNNCG+FRAVRDIS+ P DS Q ++ RMMD G+
Sbjct: 2 RFVWNFFRLENEHLNNCGQFRAVRDISIMPHDSHHQVNLERMMDDTRGL 50
>SB_6608| Best HMM Match : EXS (HMM E-Value=0.0021)
Length = 66
Score = 70.5 bits (165), Expect = 1e-12
Identities = 28/48 (58%), Positives = 38/48 (79%)
Frame = +1
Query: 43 RAVVSVVPAWTRFWQCLRRYRDSREAFPHLVNAGKYSTTFFVVLFATL 186
R +++ +PAW RF Q LRRY D+++ FPHL NAGKY+T FFVV F+T+
Sbjct: 13 RPLIACLPAWWRFAQSLRRYNDTKQKFPHLANAGKYATAFFVVFFSTI 60
>SB_11621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 37.5 bits (83), Expect = 0.012
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3
Query: 381 YYFAIVEDFVLRFIWTVSFVLTENKYVGSETMTSILAPLEVF 506
YYFA+ D +LRF W ++ + SE +T LA LEVF
Sbjct: 3 YYFAMASDLLLRFSWILTLSGGDAGLFHSEILTGFLAVLEVF 44
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 32.3 bits (70), Expect = 0.46
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 631 DDGPSRWSYKQINEEEKRKKDKGNRPSAAAEEGIDTRSSIR 753
D+GP++ K++ + +K KK+KG++ D RS R
Sbjct: 94 DEGPAQKKAKKLKKNKKHKKNKGDKDKRGGSSSEDERSGSR 134
>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
Length = 1269
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/68 (29%), Positives = 27/68 (39%)
Frame = +1
Query: 508 AFHLEFLPSRERAPEQLRQVPRRPGHLRGAPGLLRPGRHHPDDGPSRWSYKQINEEEKRK 687
A H +PS E P + G RG PG +G + S + NE R
Sbjct: 3 AKHSRTIPSGEEGPPPFVPFRQLQGDSRGRPGDRHKVNSGISNGYEKHSNHENNEGRNRN 62
Query: 688 KDKGNRPS 711
++GNR S
Sbjct: 63 DNRGNRAS 70
>SB_54716| Best HMM Match : S-antigen (HMM E-Value=1.8)
Length = 255
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = +1
Query: 670 EEEKRKKDKGNRPSAAAEEGIDTRSSIRTR 759
E+E++KK++G A + +GID R+ +++R
Sbjct: 204 EKEQQKKEEGTSDKAPSPKGIDLRAKLKSR 233
>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 520 EFLPSRERAPEQLRQVPRRPGHLRGAPGLLRPGRHHPDDGPSRWSYKQINEEEKRK---K 690
++ P+ AP R P +PG R G P + PSR ++ + ++RK K
Sbjct: 155 DYSPAGRHAPPAKR--PEKPGDRRAGKGA------PPSNKPSRPAHGRPGHSKERKEGEK 206
Query: 691 DKGNRPSAAAEEG 729
DKG + +E+G
Sbjct: 207 DKGRKSDEKSEDG 219
>SB_44248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 842
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 643 SRWSYKQINEEEKRKKDKGNRP 708
S WS K+++ + KRK++ GNRP
Sbjct: 32 SEWS-KEVSGKSKRKREDGNRP 52
>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
Length = 1199
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 499 KCSAFHLEFLPSRERAPEQLRQVPRRPGHLRGAPGLLRPGRHHPDDGP 642
KC +F P+R PE+L QV + G + P L PG + + P
Sbjct: 485 KCKDLEEDFAPARI-CPERLSQVLKDKGVITSIPTLPTPGSENQFEPP 531
>SB_13890| Best HMM Match : Herpes_UL14 (HMM E-Value=5.6)
Length = 185
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 643 SRWSYKQINEEEKRKKDKGNRP 708
S WS K+++ + KRK++ GNRP
Sbjct: 32 SEWS-KEVSGKSKRKREDGNRP 52
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 595 APGLLRPGRHHPDDGPSRWSYKQINEEEKRKKDKGNRPS--AAAEEGIDTRSSIRTR 759
AP + R + PDDGP S +I+E+E R K + R + + + D + S R R
Sbjct: 2131 APSVARRDKSSPDDGP--MSSTRIDEDEARAKRREAREARRSRTRDKDDGKESSRDR 2185
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 559 RQVPRRPGHLRGAPGLLRPGRHHPDDGPSR-WSYKQINEEEKRKKD-KGNRPSAAAEEGI 732
++ PR+ R P L RH R Y++ +EE +R+ + KG RP E
Sbjct: 1596 KEEPRQGTERRREPSLRHDDRHEDRRSEGRPEDYERRDEERRREAERKGERPREEFERKS 1655
Query: 733 DTRSSIRTRLS 765
+ RSS R++ S
Sbjct: 1656 E-RSSQRSQRS 1665
>SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 643 SRWSYKQINEEEKRKKDKGNRPSAAAEEGIDTRSSIRTR 759
SR S +I + ++ NR S++A +TRSS RTR
Sbjct: 476 SRSSRSRITSSGSTRSNRSNRRSSSASIDQETRSSRRTR 514
>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
Length = 844
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +1
Query: 556 LRQVPRRPGHLRGAPGLLR--PGRHHPDDGPSRWSYKQINEEEKRKKDKGNRPSAAAEEG 729
+R+ PG+ R PG R R S WS + N + R+ D+G S E+
Sbjct: 223 VRKYNNNPGN-RNTPGFNRNYQNRGRQQARHSNWSPRDRNNRDNRRDDRGRNRSRKDEDE 281
Query: 730 ID 735
++
Sbjct: 282 LE 283
>SB_31473| Best HMM Match : HATPase_c (HMM E-Value=0.0029)
Length = 354
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 521 NFFRLENEHLNNCGKFRAVRDISVAPLDSSDQADIIRMMDHPDG 652
+ +R+ E LNNC K+ + ISV+ + ++ +++ D DG
Sbjct: 97 HIYRILQEALNNCNKYANAKTISVS-IVKQEKIVTLQIRDDGDG 139
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,712,997
Number of Sequences: 59808
Number of extensions: 445216
Number of successful extensions: 1414
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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