Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0567.Seq
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical...    79   3e-15
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z78540-5|CAB01738.2|  793|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U41548-2|AAA83204.1|  399|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AJ133838-1|CAB44432.1|  793|Caenorhabditis elegans DYC-1 protein...    29   5.0  
AF067616-7|AAM98029.1|  423|Caenorhabditis elegans Hypothetical ...    29   5.0  
AF067616-6|AAC19192.1|  520|Caenorhabditis elegans Hypothetical ...    29   5.0  
AF067616-5|AAU05574.1|  497|Caenorhabditis elegans Hypothetical ...    29   5.0  
AF002197-6|AAD34661.1|  446|Caenorhabditis elegans Hypothetical ...    29   5.0  

>AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical
           protein Y39A1A.22 protein.
          Length = 710

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 33/53 (62%), Positives = 41/53 (77%)
 Frame = +2

Query: 506 QRFIWNFFRLENEHLNNCGKFRAVRDISVAPLDSSDQADIIRMMDHPDGVINR 664
           +RFIWN+FRLENEH+NNCG+FRAVRDISV P+   D   ++  MD  DGV +R
Sbjct: 611 RRFIWNYFRLENEHVNNCGQFRAVRDISVKPIRKGDLESLLSKMDQMDGVTHR 663



 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
 Frame = +3

Query: 276 YTYTWDVKMDWGLFSCGPSAENKFLREEIVY-SPGSYYFAIVEDFVLRFIWTVSFVLTEN 452
           YT+ WD+ MDWGL       E +FLREE++Y S   YY AI +DFVLR  W ++  L E 
Sbjct: 533 YTFLWDIFMDWGLIDPRAPKEARFLREEMIYGSKWYYYMAIAQDFVLRLAWVLNVSLGEA 592

Query: 453 KYVGSETMTSILAPLEVF 506
             + S+ +T++ AP EVF
Sbjct: 593 WTLDSDFLTTVTAPFEVF 610



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 35/69 (50%), Positives = 46/69 (66%)
 Frame = +1

Query: 43  RAVVSVVPAWTRFWQCLRRYRDSREAFPHLVNAGKYSTTFFVVLFATLKTLNNHKYPDSS 222
           R+++S++PA  RF QCLRRYRD++   PHLVNAGKYSTTFFVV    L     ++  D +
Sbjct: 457 RSLMSIIPAMIRFLQCLRRYRDTKRVHPHLVNAGKYSTTFFVVACGALN--KYYEATDPN 514

Query: 223 FDNPFLYAW 249
             + F Y W
Sbjct: 515 TTSIFFYIW 523


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
           protein F35A5.1 protein.
          Length = 1274

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 135 DEMRERLPAVPVPAQTLPEPGPGRDHAHDRAA 40
           DE  E  PA PVPA+ + +P P +  A  R A
Sbjct: 82  DEPMEEAPAAPVPAKKVRDPSPKKVPAKPRDA 113


>Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 652 SYKQINEEEKRKKDKGNR--PSAAAEEGIDTRSSIRTRLSSKMM*P 783
           S   + E ++R+KD+G R  P + AE+  D  SS +   +S +M P
Sbjct: 568 SLPPVKESKERRKDEGTRTEPESNAEDTTDYSSSDQYERTSNVMKP 613


>Z78540-5|CAB01738.2|  793|Caenorhabditis elegans Hypothetical
           protein C33G3.1a protein.
          Length = 793

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 652 SYKQINEEEKRKKDKGNR--PSAAAEEGIDTRSSIRTRLSSKMM*P 783
           S   + E ++R+KD+G R  P + AE+  D  SS +   +S +M P
Sbjct: 474 SLPPVKESKERRKDEGTRTEPESNAEDTTDYSSSDQYERTSNVMKP 519


>Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 652 SYKQINEEEKRKKDKGNR--PSAAAEEGIDTRSSIRTRLSSKMM*P 783
           S   + E ++R+KD+G R  P + AE+  D  SS +   +S +M P
Sbjct: 568 SLPPVKESKERRKDEGTRTEPESNAEDTTDYSSSDQYERTSNVMKP 613


>U41548-2|AAA83204.1|  399|Caenorhabditis elegans Hypothetical
           protein M02F4.1 protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/87 (22%), Positives = 37/87 (42%)
 Frame = +1

Query: 499 KCSAFHLEFLPSRERAPEQLRQVPRRPGHLRGAPGLLRPGRHHPDDGPSRWSYKQINEEE 678
           KC +  LE+    +   E+++  P R  H   A G  R   +H D+  S +  +   EEE
Sbjct: 178 KCRSQDLEY-DYEDEDREEMKSRPTRR-HNNNARG--RSSLNHRDEDESDYENEDYEEEE 233

Query: 679 KRKKDKGNRPSAAAEEGIDTRSSIRTR 759
            + +    R     ++ +D   + + R
Sbjct: 234 NKSRKANRRSRTDDDDNLDDGDNFKPR 260


>AJ133838-1|CAB44432.1|  793|Caenorhabditis elegans DYC-1 protein
           protein.
          Length = 793

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 652 SYKQINEEEKRKKDKGNR--PSAAAEEGIDTRSSIRTRLSSKMM*P 783
           S   + E ++R+KD+G R  P + AE+  D  SS +   +S +M P
Sbjct: 474 SLPPVKESKERRKDEGTRTEPESNAEDTTDYSSSDQYERTSNVMKP 519


>AF067616-7|AAM98029.1|  423|Caenorhabditis elegans Hypothetical
           protein F29C4.7b protein.
          Length = 423

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +1

Query: 619 RHHPDDGPSRWSYKQINEEEKRKKDKGNRPSAAAEEGI 732
           R  P   PS W  KQ ++E  R    GN PS   E  I
Sbjct: 148 RGRPTKEPSTWRLKQDDDEATRTLFVGNMPSDVKEREI 185


>AF067616-6|AAC19192.1|  520|Caenorhabditis elegans Hypothetical
           protein F29C4.7a protein.
          Length = 520

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +1

Query: 619 RHHPDDGPSRWSYKQINEEEKRKKDKGNRPSAAAEEGI 732
           R  P   PS W  KQ ++E  R    GN PS   E  I
Sbjct: 148 RGRPTKEPSTWRLKQDDDEATRTLFVGNMPSDVKEREI 185


>AF067616-5|AAU05574.1|  497|Caenorhabditis elegans Hypothetical
           protein F29C4.7c protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +1

Query: 619 RHHPDDGPSRWSYKQINEEEKRKKDKGNRPSAAAEEGI 732
           R  P   PS W  KQ ++E  R    GN PS   E  I
Sbjct: 125 RGRPTKEPSTWRLKQDDDEATRTLFVGNMPSDVKEREI 162


>AF002197-6|AAD34661.1|  446|Caenorhabditis elegans Hypothetical
           protein F20H11.4 protein.
          Length = 446

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 628 PDDGPSRWSYKQINEEEKRKKDKGNR 705
           PDDG  +   K++ +EEK+K +K  +
Sbjct: 59  PDDGKKQEDKKEVKKEEKKKDEKNKK 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,903,356
Number of Sequences: 27780
Number of extensions: 329603
Number of successful extensions: 1177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)