Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0566.Seq
(683 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 157 2e-37
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 151 2e-35
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 149 6e-35
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 138 9e-32
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 128 1e-28
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 123 4e-27
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 122 8e-27
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 116 5e-25
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 115 9e-25
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 111 2e-23
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 110 3e-23
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 86 7e-16
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 81 3e-14
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 75 2e-12
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 72 1e-11
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 69 1e-10
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 66 6e-10
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 63 5e-09
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 61 3e-08
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 58 3e-07
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 56 6e-07
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 54 3e-06
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 54 4e-06
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 52 1e-05
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 51 2e-05
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 51 3e-05
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 51 3e-05
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 50 7e-05
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 48 2e-04
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 44 0.005
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 42 0.014
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 40 0.056
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 38 0.17
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 36 0.70
UniRef50_A7N5S6 Cluster: Putative uncharacterized protein; n=1; ... 33 4.9
UniRef50_Q18ED9 Cluster: Cell surface calcium-binding acidic-rep... 33 6.5
UniRef50_A1K510 Cluster: Conserved hypothetical membrane protein... 33 8.6
UniRef50_A2E241 Cluster: Putative uncharacterized protein; n=1; ... 33 8.6
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 8.6
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 157 bits (382), Expect = 2e-37
Identities = 73/83 (87%), Positives = 76/83 (91%)
Frame = +1
Query: 1 AXGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
A GPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV
Sbjct: 2 ARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPA 249
KIV QRL+KVDGKVRTDPTYPA
Sbjct: 62 TKIVMQRLVKVDGKVRTDPTYPA 84
Score = 140 bits (339), Expect = 3e-32
Identities = 62/85 (72%), Positives = 72/85 (84%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRT
Sbjct: 87 MDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMD 509
IRYPDPLI NDS+Q+DIA+ KI D
Sbjct: 147 IRYPDPLIHANDSVQVDIASGKITD 171
Score = 74.1 bits (174), Expect = 3e-12
Identities = 33/41 (80%), Positives = 35/41 (85%)
Frame = +1
Query: 559 LGACGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
LG G +V+RERHPGSFDIVHIKDS GH FATRL NVFIIG
Sbjct: 189 LGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIG 229
Score = 50.8 bits (116), Expect = 3e-05
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVGT 577
+IKF+SGNLCMITGGRNLGRVGT
Sbjct: 172 YIKFDSGNLCMITGGRNLGRVGT 194
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 151 bits (365), Expect = 2e-35
Identities = 69/83 (83%), Positives = 74/83 (89%)
Frame = +1
Query: 1 AXGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
A GPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPA 249
KI QR IK+DGKVRTD TYPA
Sbjct: 62 KKICMQRFIKIDGKVRTDITYPA 84
Score = 142 bits (345), Expect = 5e-33
Identities = 63/92 (68%), Positives = 74/92 (80%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RT
Sbjct: 87 MDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDART 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 530
IRYPDPLIKVND+IQ+D+ T KI D G
Sbjct: 147 IRYPDPLIKVNDTIQIDLETGKITDFIKFDTG 178
Score = 68.1 bits (159), Expect = 2e-10
Identities = 27/41 (65%), Positives = 36/41 (87%)
Frame = +1
Query: 559 LGACGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
LG G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+IG
Sbjct: 189 LGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIG 229
Score = 45.6 bits (103), Expect = 0.001
Identities = 17/22 (77%), Positives = 21/22 (95%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVG 574
FIKF++GNLCM+TGG NLGR+G
Sbjct: 172 FIKFDTGNLCMVTGGANLGRIG 193
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 149 bits (361), Expect = 6e-35
Identities = 68/82 (82%), Positives = 73/82 (89%)
Frame = +1
Query: 1 AXGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
A GPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYP 246
KI QR IK+DGKVRTD TYP
Sbjct: 62 KKICMQRFIKIDGKVRTDITYP 83
Score = 83.4 bits (197), Expect(2) = 1e-27
Identities = 34/52 (65%), Positives = 44/52 (84%)
Frame = +3
Query: 354 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMD 509
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI D
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITD 203
Score = 71.3 bits (167), Expect = 2e-11
Identities = 29/41 (70%), Positives = 37/41 (90%)
Frame = +1
Query: 559 LGACGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
LG G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+IG
Sbjct: 221 LGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIG 261
Score = 62.9 bits (146), Expect(2) = 1e-27
Identities = 28/34 (82%), Positives = 31/34 (91%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 356
MDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 87 MDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 42.3 bits (95), Expect = 0.011
Identities = 15/22 (68%), Positives = 20/22 (90%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVG 574
FIKF++ N+CM+TGG NLGR+G
Sbjct: 204 FIKFDTSNMCMVTGGANLGRIG 225
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 138 bits (335), Expect = 9e-32
Identities = 63/83 (75%), Positives = 71/83 (85%)
Frame = +1
Query: 1 AXGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
A G KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV
Sbjct: 2 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPA 249
+ I+ QR I+VDGKVRTD TYPA
Sbjct: 62 ISILMQRHIQVDGKVRTDKTYPA 84
Score = 127 bits (306), Expect = 3e-28
Identities = 58/95 (61%), Positives = 71/95 (74%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRT
Sbjct: 87 MDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLGTCV 539
IRYPDPLIK ND+I+LD+ KI++ +G V
Sbjct: 147 IRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 58.8 bits (136), Expect = 1e-07
Identities = 25/40 (62%), Positives = 31/40 (77%)
Frame = +1
Query: 562 GACGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
G G I +RE+H GSF+ +HI+DSTGH FATRL NV+ IG
Sbjct: 190 GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIG 229
Score = 39.5 bits (88), Expect = 0.075
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVG 574
FIKF+ GN+ M+TGGRN GRVG
Sbjct: 172 FIKFDVGNVVMVTGGRNRGRVG 193
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 128 bits (309), Expect = 1e-28
Identities = 55/82 (67%), Positives = 64/82 (78%)
Frame = +1
Query: 1 AXGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
A GP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV
Sbjct: 2 ARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYP 246
IVK R IK+DGK+RTD YP
Sbjct: 62 TMIVKNRTIKIDGKIRTDTRYP 83
Score = 105 bits (251), Expect = 1e-21
Identities = 46/92 (50%), Positives = 67/92 (72%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRT
Sbjct: 87 MDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 530
IRYP P ++ ND+I+L++ T KI+D +G
Sbjct: 147 IRYPHPELQANDTIKLNLETGKIVDFVKFDIG 178
Score = 66.5 bits (155), Expect = 6e-10
Identities = 29/41 (70%), Positives = 34/41 (82%)
Frame = +1
Query: 559 LGACGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
+G G IV RE HPGSF+IVHIKD+ G+TF TRLNNVF+IG
Sbjct: 189 MGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIG 229
Score = 32.7 bits (71), Expect = 8.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVG 574
F+KF+ GN M+ GG +GRVG
Sbjct: 172 FVKFDIGNTAMMIGGNGMGRVG 193
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 123 bits (297), Expect = 4e-27
Identities = 56/74 (75%), Positives = 62/74 (83%)
Frame = +1
Query: 1 AXGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
A P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 AHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 181 LKIVKQRLIKVDGK 222
KI Q IK+DGK
Sbjct: 62 KKIRMQHFIKMDGK 75
Score = 110 bits (264), Expect = 4e-23
Identities = 48/75 (64%), Positives = 58/75 (77%)
Frame = +3
Query: 306 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 485
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 486 IATTKIMDSSSLSLG 530
+ T KI D G
Sbjct: 136 LETGKITDFFKFDTG 150
Score = 66.1 bits (154), Expect = 8e-10
Identities = 26/41 (63%), Positives = 35/41 (85%)
Frame = +1
Query: 559 LGACGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
LG G I +RE HPGSFD+VH+KD+ G++FATRL+N+F+IG
Sbjct: 161 LGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNIFVIG 201
Score = 44.0 bits (99), Expect = 0.003
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVG 574
F KF++GNLCM+TGG NLGR+G
Sbjct: 144 FFKFDTGNLCMVTGGTNLGRIG 165
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 122 bits (294), Expect = 8e-27
Identities = 60/82 (73%), Positives = 66/82 (80%)
Frame = +1
Query: 1 AXGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV
Sbjct: 13 AFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALTGDEV 71
Query: 181 LKIVKQRLIKVDGKVRTDPTYP 246
KI Q IKVDGK+RTD P
Sbjct: 72 KKICMQWFIKVDGKIRTDNNLP 93
Score = 111 bits (266), Expect = 2e-23
Identities = 49/84 (58%), Positives = 64/84 (76%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
IMDV+SI+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV HD
Sbjct: 96 IMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVIHDIH 155
Query: 432 TIRYPDPLIKVNDSIQLDIATTKI 503
T+R+PD LIKVND+IQ+D+ T KI
Sbjct: 156 TVRHPDSLIKVNDTIQIDLETGKI 179
Score = 38.3 bits (85), Expect = 0.17
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = +2
Query: 512 IKFESGNLCMITGGRNLGRVG 574
+KF++GNLC++TGG N GR+G
Sbjct: 182 LKFDTGNLCLVTGGGNWGRIG 202
Score = 38.3 bits (85), Expect = 0.17
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 562 GACGHIVSRERHPGSFDIVHIKDSTGHTFA 651
G G I +RERHP SFD H+KD+ ++F+
Sbjct: 199 GRIGVITNRERHPVSFDTFHVKDANSNSFS 228
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 116 bits (279), Expect = 5e-25
Identities = 53/97 (54%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGR
Sbjct: 86 VMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGR 145
Query: 432 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSLGT-CV 539
TIR+P+ LIK NDSI LD+ K++D S+G+ CV
Sbjct: 146 TIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCV 182
Score = 107 bits (258), Expect = 2e-22
Identities = 48/81 (59%), Positives = 61/81 (75%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 186
G KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L
Sbjct: 4 GIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLN 63
Query: 187 IVKQRLIKVDGKVRTDPTYPA 249
I+K+ I VDGKVR D +PA
Sbjct: 64 ILKKNEIYVDGKVRADKNFPA 84
Score = 33.5 bits (73), Expect = 4.9
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVG 574
FIKF G+LC++ G N+GR+G
Sbjct: 172 FIKFSIGSLCVVIKGSNIGRIG 193
Score = 32.7 bits (71), Expect = 8.6
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 559 LGACGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
+G G ++ GS IV +KD G +F+T+ N+F+IG
Sbjct: 189 IGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIG 229
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 115 bits (277), Expect = 9e-25
Identities = 55/92 (59%), Positives = 66/92 (71%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+
Sbjct: 22 HLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKR 81
Query: 199 RLIKVDGKVRTDPTYPAELWMLSQLRRLMNCF 294
RL+KVDGKVRT+ YP L + +L + F
Sbjct: 82 RLVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113
Score = 101 bits (242), Expect = 2e-20
Identities = 42/93 (45%), Positives = 65/93 (69%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGR
Sbjct: 100 LMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGR 159
Query: 432 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 530
TI Y DP ++V+D+++ +I T ++ +G
Sbjct: 160 TISYVDPSVRVHDALKFNIKTGEVESVIKFKVG 192
Score = 49.6 bits (113), Expect = 7e-05
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +1
Query: 559 LGACGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
+G G I E+ SFDIVH+KD++G FATR+ NVF+IG
Sbjct: 203 VGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIG 243
Score = 33.1 bits (72), Expect = 6.5
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +2
Query: 512 IKFESGNLCMITGGRNLGRVGT 577
IKF+ G++ M+T G N+GRVGT
Sbjct: 187 IKFKVGDVAMVTAGGNVGRVGT 208
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 111 bits (266), Expect = 2e-23
Identities = 48/93 (51%), Positives = 67/93 (72%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD R
Sbjct: 198 LMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSR 257
Query: 432 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 530
TIR+P+P IK+ D+++ D+ KI + + L G
Sbjct: 258 TIRFPNPEIKIGDTLKYDLVNNKIENFAHLESG 290
Score = 80.6 bits (190), Expect = 3e-14
Identities = 54/129 (41%), Positives = 69/129 (53%), Gaps = 31/129 (24%)
Frame = +1
Query: 1 AXGPKKHLKRLNAPKAWMLD-------------------------KLGGVY----APRPS 93
A GPKKHLKR+NAPK+WML+ KL +Y A RPS
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 94 TGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAELWMLS 267
GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP L +
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVV 202
Query: 268 QLRRLMNCF 294
++ + F
Sbjct: 203 RIEKTDQSF 211
Score = 54.4 bits (125), Expect = 2e-06
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = +1
Query: 559 LGACGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
+G G I E+H GSFDI H+KD+ G+ FATRL N+F++G
Sbjct: 301 IGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLG 341
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 110 bits (265), Expect = 3e-23
Identities = 51/79 (64%), Positives = 58/79 (73%)
Frame = +1
Query: 13 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 192
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 193 KQRLIKVDGKVRTDPTYPA 249
+Q L+ VD R D YPA
Sbjct: 63 RQGLVHVDNHPRRDGKYPA 81
Score = 86.2 bits (204), Expect = 7e-16
Identities = 41/85 (48%), Positives = 53/85 (62%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG
Sbjct: 84 MDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHR 143
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMD 509
IRYPDP + D+I ++ K +D
Sbjct: 144 IRYPDPHTSIGDTIVYNVKEKKCVD 168
Score = 52.8 bits (121), Expect = 7e-06
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = +1
Query: 562 GACGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
G G IV E HPG+F+I H+KD++G FATR N+F+IG
Sbjct: 187 GRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVIG 226
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 86.2 bits (204), Expect = 7e-16
Identities = 39/84 (46%), Positives = 56/84 (66%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 186
G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+
Sbjct: 4 GHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSI 63
Query: 187 IVKQRLIKVDGKVRTDPTYPAELW 258
I+ ++ IKV+G+VRT+ +P L+
Sbjct: 64 ILAEKNIKVNGRVRTNSHFPVGLF 87
Score = 75.8 bits (178), Expect = 9e-13
Identities = 36/86 (41%), Positives = 59/86 (68%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+ DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G
Sbjct: 86 LFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGL 144
Query: 432 TIRYPDPLIKVNDSIQLDIATTKIMD 509
+IR+ DP I + +I++ T+K+++
Sbjct: 145 SIRFCDPAIDLGYTIKISNETSKVIE 170
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 80.6 bits (190), Expect = 3e-14
Identities = 40/92 (43%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 183
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 184 KIVKQRLIKVDGKVRTDPTYPAELWMLSQLRR 279
KI+ + I VDG VR +P +P + + ++ R
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPR 98
Score = 41.5 bits (93), Expect = 0.019
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
IMDVV I +T + +R++ + R + I+ EEA+ K+C++K + HDG+
Sbjct: 90 IMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGK 149
Query: 432 T--IRYPDP------LIKVNDSIQLDI 488
+ DP + V DS+ L++
Sbjct: 150 NWLVEIEDPTDPKEDVYSVGDSLVLEL 176
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 74.9 bits (176), Expect = 2e-12
Identities = 36/83 (43%), Positives = 50/83 (60%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 186
GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E K
Sbjct: 5 GPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKK 64
Query: 187 IVKQRLIKVDGKVRTDPTYPAEL 255
I++ I +DG R + +PA L
Sbjct: 65 IIQTGKILIDGLKRKEYKHPAGL 87
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 72.1 bits (169), Expect = 1e-11
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +1
Query: 19 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 195
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 196 QRLIKVDGKVRTDPTYPAEL 255
+ +KVDG VR D +P L
Sbjct: 63 RGYVKVDGVVRRDYKFPVGL 82
Score = 40.7 bits (91), Expect = 0.032
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MDV+ I T E++R++ D + + I+ EEA KL +V+ L HDGR
Sbjct: 82 LMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGR 141
Query: 432 ---TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 530
T IK DS+ D+ I L LG
Sbjct: 142 NLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLG 177
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 68.9 bits (161), Expect = 1e-10
Identities = 32/85 (37%), Positives = 49/85 (57%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 199 RLIKVDGKVRTDPTYPAELWMLSQL 273
+KVDGKVR D YP L + +L
Sbjct: 63 GYVKVDGKVRRDYKYPVGLMDVIEL 87
Score = 35.9 bits (79), Expect = 0.92
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MDV+ + NE +R+I D RI EA K+C+++ L HDGR
Sbjct: 81 LMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGR 140
Query: 432 TI 437
I
Sbjct: 141 NI 142
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 66.5 bits (155), Expect = 6e-10
Identities = 33/83 (39%), Positives = 48/83 (57%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 186
G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E +
Sbjct: 7 GSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARR 66
Query: 187 IVKQRLIKVDGKVRTDPTYPAEL 255
I+ R+I+VDG+V TD +P L
Sbjct: 67 ILASRVIEVDGRVVTDYKFPVGL 89
Score = 40.7 bits (91), Expect = 0.032
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MDV+ I + +R++ D + I PEEA YKL +++R T HDGR
Sbjct: 89 LMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGR 148
Query: 432 TI 437
+
Sbjct: 149 NV 150
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 63.3 bits (147), Expect = 5e-09
Identities = 30/80 (37%), Positives = 46/80 (57%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 186
G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K
Sbjct: 5 GGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARK 64
Query: 187 IVKQRLIKVDGKVRTDPTYP 246
++ + +VDG VR D +P
Sbjct: 65 LISEGHFRVDGVVRKDYKFP 84
Score = 39.5 bits (88), Expect = 0.075
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
MDV+ + T E FR++ Y VK F +H I EE K +++ T L HDGR
Sbjct: 88 MDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGR 146
Query: 432 TI--RYPDPLIKVND 470
I R DP V D
Sbjct: 147 NILVRVKDPRNPVED 161
Score = 33.9 bits (74), Expect = 3.7
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 506 GFIKFESGNLCMITGGRNLGRVG 574
G IKF G + +I GGRN+GRVG
Sbjct: 180 GHIKFGEGAIAIIVGGRNVGRVG 202
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 60.9 bits (141), Expect = 3e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 199 RLIKVDGKVRTDPTY 243
+ VDGKVR D Y
Sbjct: 65 GKVLVDGKVRKDYRY 79
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 57.6 bits (133), Expect = 3e-07
Identities = 27/80 (33%), Positives = 40/80 (50%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 186
G +KHLK APK W + + +PS G H + L L + +R+ LK A E +
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 187 IVKQRLIKVDGKVRTDPTYP 246
I+ + VDG+V D +P
Sbjct: 65 IINSGNVLVDGRVIKDYKFP 84
Score = 55.6 bits (128), Expect = 1e-06
Identities = 31/95 (32%), Positives = 49/95 (51%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MD++ I KT E++R++ D KGR +++I EE KLCK+ +T + HDG+
Sbjct: 88 MDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKN 145
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLGTCV 539
+ + V D I L + +I + L G CV
Sbjct: 146 VIIDENDYNVGDVIDLKVPDHEINEVFELKEGACV 180
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 56.4 bits (130), Expect = 6e-07
Identities = 24/72 (33%), Positives = 41/72 (56%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 199 RLIKVDGKVRTD 234
R + VDG++ TD
Sbjct: 65 RQVLVDGRIETD 76
Score = 40.7 bits (91), Expect = 0.032
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MDV+++ + + FR I DV G+ I+ + A KLC+V +T + HDGR
Sbjct: 83 LMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGR 140
Query: 432 TIRYPD-PLIKVNDSIQLDIATTKIMDSSSLSLGTCV*SREAVTWGVWAHRVPRETSR 602
I D L D++ + + + S G G+ A V R+ R
Sbjct: 141 NILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKGATAYLTGGSHIGITAKVVSRDIKR 198
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 54.0 bits (124), Expect = 3e-06
Identities = 30/79 (37%), Positives = 40/79 (50%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
H+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 199 RLIKVDGKVRTDPTYPAEL 255
+ VDGKVR D YP L
Sbjct: 63 GKVLVDGKVRRDYKYPVGL 81
Score = 35.5 bits (78), Expect = 1.2
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MDVV I + R+I D T I+ E+AKYK ++ T V L DGR
Sbjct: 81 LMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGR 140
Query: 432 TI 437
I
Sbjct: 141 NI 142
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 53.6 bits (123), Expect = 4e-06
Identities = 26/70 (37%), Positives = 41/70 (58%)
Frame = +1
Query: 25 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 204
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 205 IKVDGKVRTD 234
+ ++G + TD
Sbjct: 64 VLLNGHIVTD 73
Score = 33.1 bits (72), Expect = 6.5
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 389
+ D++S K ++ + ++ D KGR + I+ + AK +L KV T
Sbjct: 80 VFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTT 125
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 52.4 bits (120), Expect = 1e-05
Identities = 26/80 (32%), Positives = 40/80 (50%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
H KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 199 RLIKVDGKVRTDPTYPAELW 258
+ VDG R D +P L+
Sbjct: 63 GKVLVDGISRKDLRFPVGLF 82
Score = 36.7 bits (81), Expect = 0.53
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+ DV+++ NE +R++ D KGR ++++ E KLC++ T L +DG
Sbjct: 81 LFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVKGGKIQLNLNDGT 139
Query: 432 TI 437
I
Sbjct: 140 NI 141
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 51.2 bits (117), Expect = 2e-05
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
H KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSE 63
Query: 199 RLIKVDGKVRTDPTYPAEL 255
+ VDG R D +P L
Sbjct: 64 GNVLVDGVARKDLRFPVGL 82
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 50.8 bits (116), Expect = 3e-05
Identities = 31/92 (33%), Positives = 44/92 (47%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDV+ I E +R++Y+ +G + + T E A KL KV+ P N L THDGRT
Sbjct: 83 MDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRT 140
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 530
D KV D + + KI + + G
Sbjct: 141 FITDDKSKKVGDVWAVSVPDMKISEIIKMQPG 172
Score = 35.5 bits (78), Expect = 1.2
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +1
Query: 25 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 204
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 205 IKVDGK 222
+KVDGK
Sbjct: 66 VKVDGK 71
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 50.8 bits (116), Expect = 3e-05
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 13 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKI 189
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 190 VKQRLIKVDGKVRTDPTYPAELW 258
+ + VDG+ D +P L+
Sbjct: 66 LNNGKVLVDGRPIKDYKFPVGLF 88
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 49.6 bits (113), Expect = 7e-05
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+MD +S N+ +R++ G+ T++ I E K+CKV ++ ++T D R
Sbjct: 86 LMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLR 145
Query: 432 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSLGT-CV*SR 548
++ IKV DS+ + +I+ + +G+ C+ +R
Sbjct: 146 ELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITR 185
Score = 41.1 bits (92), Expect = 0.024
Identities = 24/85 (28%), Positives = 40/85 (47%)
Frame = +1
Query: 1 AXGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
A G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 2 AKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEA 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPAEL 255
K+VK + V+GK +P L
Sbjct: 62 QKVVKTGFLYVNGKKCLSHKFPISL 86
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 48.0 bits (109), Expect = 2e-04
Identities = 26/73 (35%), Positives = 41/73 (56%)
Frame = +1
Query: 16 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 195
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILH 61
Query: 196 QRLIKVDGKVRTD 234
QR + V+G+ D
Sbjct: 62 QRDVLVNGRACKD 74
Score = 41.5 bits (93), Expect = 0.019
Identities = 25/81 (30%), Positives = 37/81 (45%)
Frame = +3
Query: 252 IMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGR 431
+ D+VSI K + +R+ DVKG I E AK +LCK++ T L G
Sbjct: 81 VFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGA 140
Query: 432 TIRYPDPLIKVNDSIQLDIAT 494
+ D K DS+ + + T
Sbjct: 141 NV-LADNTYKAKDSVVVTLGT 160
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 43.6 bits (98), Expect = 0.005
Identities = 22/80 (27%), Positives = 40/80 (50%)
Frame = +1
Query: 19 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 198
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 199 RLIKVDGKVRTDPTYPAELW 258
+ ++GK +D P ++
Sbjct: 63 DNVLINGKAISDEERPVGMF 82
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 41.9 bits (94), Expect = 0.014
Identities = 20/91 (21%), Positives = 44/91 (48%)
Frame = +1
Query: 25 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 204
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 205 IKVDGKVRTDPTYPAELWMLSQLRRLMNCFV 297
+KVDG++ D +P + + L N ++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97
Score = 39.9 bits (89), Expect = 0.056
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGR 431
MDV+SI+ + ++YD KG+ I + P KL K VK+ G + L HDG+
Sbjct: 84 MDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGK 142
Query: 432 TIRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 530
TI I +D + + I +I + ++ G
Sbjct: 143 TIVTDRKDINTSDVLLMKIPDLEIENVLKIAEG 175
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 39.9 bits (89), Expect = 0.056
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +1
Query: 25 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 204
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 205 IKVDGKV 225
+ VDGKV
Sbjct: 66 VMVDGKV 72
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 38.3 bits (85), Expect = 0.17
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = +1
Query: 16 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 195
K LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 8 KKLKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIY 67
Query: 196 QRLIKVDGKVRT 231
++VDG RT
Sbjct: 68 SGNVEVDGVKRT 79
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 36.3 bits (80), Expect = 0.70
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = -1
Query: 476 DGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID* 297
+G+ D + V +GAA+++ R+ L QLVL D V ES+L ++D
Sbjct: 121 NGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDE 180
Query: 296 TKQFISLLN*DNI 258
+ FI+L + D++
Sbjct: 181 PEVFIALFDGDDV 193
Score = 33.1 bits (72), Expect = 6.5
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = -3
Query: 678 DYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDVP 571
D EHV + R + ++ GVL VHN EG + LA D P
Sbjct: 53 DGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHP 88
>UniRef50_A7N5S6 Cluster: Putative uncharacterized protein; n=1;
Vibrio harveyi ATCC BAA-1116|Rep: Putative
uncharacterized protein - Vibrio harveyi ATCC BAA-1116
Length = 682
Score = 33.5 bits (73), Expect = 4.9
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Frame = +3
Query: 315 GRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIK-VNDSIQLDIA 491
G +T+H ++ E A + + + G K Y+VTH G+ + DP K ++ ++
Sbjct: 67 GTYTLHDLSGEYAGIRHTFIPDIKPGQK-YGYIVTHQGQPLLISDPYAKSIDKALHYQPP 125
Query: 492 TTKIMDSSSLSLGTCV*SREAVTWGVWAH-RVPRE 593
+ I S + CV + W H R+PRE
Sbjct: 126 FSPI---KSFDMPKCVVLEDNFDWQDTDHPRIPRE 157
>UniRef50_Q18ED9 Cluster: Cell surface calcium-binding acidic-repeat
protein; n=1; Haloquadratum walsbyi DSM 16790|Rep: Cell
surface calcium-binding acidic-repeat protein -
Haloquadratum walsbyi (strain DSM 16790)
Length = 830
Score = 33.1 bits (72), Expect = 6.5
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 554 RNLGRVGTSCPARDIPAPS-TLCTSRTPRDTPSP 652
R+ G +G CPAR P P+ T + TP TP+P
Sbjct: 498 RDSGSLGKGCPARTTPTPTPTPTDTPTPTSTPTP 531
>UniRef50_A1K510 Cluster: Conserved hypothetical membrane protein;
n=1; Azoarcus sp. BH72|Rep: Conserved hypothetical
membrane protein - Azoarcus sp. (strain BH72)
Length = 232
Score = 32.7 bits (71), Expect = 8.6
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 100 PHKLRECLPLV---IFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAELWMLSQ 270
PH+ ECL + + L R KY L ++ ++ +++ L + +VR DP P LW L +
Sbjct: 129 PHENIECLEVFHACLLLGFRGKYLLDDSDRIRYLQRTLAQELQRVRGDPQTPPALWKLPE 188
>UniRef50_A2E241 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 227
Score = 32.7 bits (71), Expect = 8.6
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +3
Query: 414 VTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 530
V+HDGRT YPD + ++ L ++T + ++ S +LG
Sbjct: 120 VSHDGRTSPYPD---DITSTVDLPVSTDSVSNADSTALG 155
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 8.6
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +1
Query: 52 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 213
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 764,328,337
Number of Sequences: 1657284
Number of extensions: 16680620
Number of successful extensions: 51256
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 48626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51226
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -