Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0566.Seq
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 144 8e-36
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 144 8e-36
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 143 2e-35
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 30 0.27
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 30 0.36
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.3
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 4.4
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 26 5.8
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 5.8
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 7.7
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 7.7
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 7.7
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.7
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 144 bits (350), Expect = 8e-36
Identities = 64/83 (77%), Positives = 74/83 (89%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRT
Sbjct: 87 MDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKI 503
IRYPDPLIKVND+I+L++ T KI
Sbjct: 147 IRYPDPLIKVNDTIKLNLETNKI 169
Score = 136 bits (329), Expect = 3e-33
Identities = 60/80 (75%), Positives = 67/80 (83%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 186
GPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 4 GPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKA 63
Query: 187 IVKQRLIKVDGKVRTDPTYP 246
I+ QRLIKVDGKVRTD T+P
Sbjct: 64 ILMQRLIKVDGKVRTDSTFP 83
Score = 56.8 bits (131), Expect = 3e-09
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +1
Query: 559 LGACGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
+G G IV RE H GSF+I+H+KD+ FATRL+NVF+IG
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIG 229
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVGT 577
FIKF++ M+TGGRN+GRVGT
Sbjct: 172 FIKFDTSAQVMVTGGRNMGRVGT 194
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 144 bits (350), Expect = 8e-36
Identities = 64/83 (77%), Positives = 74/83 (89%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRT
Sbjct: 87 MDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKI 503
IRYPDPLIKVND+I+L++ T KI
Sbjct: 147 IRYPDPLIKVNDTIKLNLETNKI 169
Score = 134 bits (325), Expect = 8e-33
Identities = 59/80 (73%), Positives = 67/80 (83%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 186
GPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 4 GPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKA 63
Query: 187 IVKQRLIKVDGKVRTDPTYP 246
I+ QRLI+VDGKVRTD T+P
Sbjct: 64 ILMQRLIQVDGKVRTDSTFP 83
Score = 56.8 bits (131), Expect = 3e-09
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +1
Query: 559 LGACGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
+G G IV RE H GSF+I+H+KD+ FATRL+NVF+IG
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIG 229
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVGT 577
FIKF++ M+TGGRN+GRVGT
Sbjct: 172 FIKFDTSAQVMVTGGRNMGRVGT 194
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 143 bits (347), Expect = 2e-35
Identities = 63/83 (75%), Positives = 74/83 (89%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRT
Sbjct: 87 MDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKI 503
IRYPDPLIKVND+I+L++ T KI
Sbjct: 147 IRYPDPLIKVNDTIKLNLETNKI 169
Score = 136 bits (329), Expect = 3e-33
Identities = 60/80 (75%), Positives = 67/80 (83%)
Frame = +1
Query: 7 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 186
GPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV
Sbjct: 4 GPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKA 63
Query: 187 IVKQRLIKVDGKVRTDPTYP 246
I+ QRLIKVDGKVRTD T+P
Sbjct: 64 ILMQRLIKVDGKVRTDSTFP 83
Score = 56.8 bits (131), Expect = 3e-09
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +1
Query: 559 LGACGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
+G G IV RE H GSF+I+H+KD+ FATRL+NVF+IG
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIG 229
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVGT 577
FIKF++ M+TGGRN+GRVGT
Sbjct: 172 FIKFDTSAQVMVTGGRNMGRVGT 194
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 30.3 bits (65), Expect = 0.27
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 675 YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDVPTR 565
Y V+ P EG LD+H+ A ++L GH++ R
Sbjct: 901 YRVVLHPEHEGAVVEFLDIHDAGKASLALEGHEIGGR 937
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 29.9 bits (64), Expect = 0.36
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 458 QSQRFHPVRHCNYEDYGFIKFES 526
++++ HPVRH YED + FE+
Sbjct: 5 ENEKIHPVRHSKYEDKSKLPFET 27
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 551 GRNLGRVGTSCPARDIPAPSTLCTSRTPRDTPSP 652
G N+G P IP T + P DTP+P
Sbjct: 239 GDNVGSNSKGSPTTSIPEHKTSINNNKPEDTPTP 272
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 258 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 434
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 435 IR 440
++
Sbjct: 1778 LK 1779
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 425 WPHHPLPRPTYQSQR 469
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 262 LSQLRRLMNCFV*SMMLRADSQSTVSPLRRLSTSCVK 372
LS+++ L+NCF+ S + D + LR L +K
Sbjct: 424 LSRIKHLLNCFLNSSTVSLDVSMVLELLRDLKKKKIK 460
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -3
Query: 249 SRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 97
S+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 28 SKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 503 YGFIKFESGNLCMITGGRNLGRVGTSCPARDIPAPSTLCT 622
Y IKFE LC+I G +NL ++ A+ S LC+
Sbjct: 707 YNDIKFEEMVLCVIKGDQNLLEHNSNNNAKLALNESLLCS 746
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 428 PHHPLPRPTYQSQRFHPVRHCNYEDY 505
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 663 VQPRGEGVSRG--VLDVHNVEGAGMSLAGHDVPTRPKLRPPVIIHKFPDSNLMN 508
V+P+G G S + +H+ G G+ + D R K P IH+ + ++ N
Sbjct: 96 VEPKGVGSSMDNHAITIHHSTGNGLLRSSFDHDYRQKNSPRNSIHRLSNISIGN 149
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 353 SLLRGDTVDCESALNIID*TKQ 288
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,360
Number of Sequences: 5004
Number of extensions: 66401
Number of successful extensions: 194
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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