Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0566.Seq
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 136 1e-32
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 136 1e-32
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 136 2e-32
11_06_0087 - 19919224-19922304 32 0.37
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.85
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.4
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 4.5
06_03_0124 - 16942492-16945032,16945478-16945572,16945966-169460... 29 4.5
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 6.0
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 136 bits (330), Expect = 1e-32
Identities = 61/83 (73%), Positives = 70/83 (84%)
Frame = +1
Query: 1 AXGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
A G KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV
Sbjct: 2 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPA 249
+ I+ QR + VDGKVRTD TYPA
Sbjct: 62 ISILMQRHVLVDGKVRTDKTYPA 84
Score = 122 bits (293), Expect = 4e-28
Identities = 53/95 (55%), Positives = 70/95 (73%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRT
Sbjct: 87 MDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLGTCV 539
IRYPDP+IK ND+I++D+ T KI+D +G V
Sbjct: 147 IRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 56.0 bits (129), Expect = 3e-08
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = +1
Query: 562 GACGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
G G I +RE+H GSF+ +H++D+ GH FATRL NVF IG
Sbjct: 190 GRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIG 229
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVG 574
FIKF+ GN+ M+TGGRN GRVG
Sbjct: 172 FIKFDVGNVVMVTGGRNTGRVG 193
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 136 bits (330), Expect = 1e-32
Identities = 61/83 (73%), Positives = 70/83 (84%)
Frame = +1
Query: 1 AXGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
A G KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV
Sbjct: 2 ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREV 61
Query: 181 LKIVKQRLIKVDGKVRTDPTYPA 249
+ I+ QR + VDGKVRTD TYPA
Sbjct: 62 ISILMQRHVLVDGKVRTDKTYPA 84
Score = 122 bits (295), Expect = 2e-28
Identities = 54/95 (56%), Positives = 70/95 (73%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRT
Sbjct: 87 MDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRT 146
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLGTCV 539
IRYPDPLIK ND+I++D+ T KI+D +G V
Sbjct: 147 IRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = +1
Query: 562 GACGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
G G I +RE+H GSF+ +H++D+ GH FATRL NVF IG
Sbjct: 190 GRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTIG 229
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVG 574
FIKF+ GN+ M+TGGRN GRVG
Sbjct: 172 FIKFDVGNVVMVTGGRNTGRVG 193
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 136 bits (329), Expect = 2e-32
Identities = 61/83 (73%), Positives = 69/83 (83%)
Frame = +1
Query: 1 AXGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
A G KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 181 LKIVKQRLIKVDGKVRTDPTYPA 249
+ I+ QR + VDGKVRTD TYPA
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPA 100
Score = 126 bits (303), Expect = 2e-29
Identities = 57/95 (60%), Positives = 71/95 (74%)
Frame = +3
Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
MDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G K +P+L T+DGRT
Sbjct: 103 MDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRT 162
Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLGTCV 539
IRYPDPLIK ND+I++D+ T KI+D +G V
Sbjct: 163 IRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIV 197
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = +1
Query: 562 GACGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
G G I SRE+H GSF+ +H++D+ GH FATR+ NVF IG
Sbjct: 206 GRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIG 245
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +2
Query: 509 FIKFESGNLCMITGGRNLGRVG 574
FIKF+ GN+ M+TGGRN GRVG
Sbjct: 188 FIKFDVGNIVMVTGGRNTGRVG 209
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 32.3 bits (70), Expect = 0.37
Identities = 34/88 (38%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +1
Query: 244 PAELWMLSQLRRLMNCFV*SMMLRADSQSTVSPLRRLSTSCVKSSVWRPDLRMFRTW*RM 423
P L LS LR L S L S+ +S L R+ S S+ DL R W
Sbjct: 162 PPHLGNLSSLRYLDLSTDFSPQLARSSE--LSWLARMP-SLRHLSLSSVDLSSARDWPLA 218
Query: 424 MAA-PSATQTHLSKSTIPSS*TLQLRRL 504
+A PS T HLS ++PSS T Q RRL
Sbjct: 219 IAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.85
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 142 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 41
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 155 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 27
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 39 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 203
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>06_03_0124 -
16942492-16945032,16945478-16945572,16945966-16946076,
16946142-16946229
Length = 944
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/79 (26%), Positives = 32/79 (40%)
Frame = +1
Query: 55 LDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTD 234
+++L VY T +E P+ I + E L V ++ G R+
Sbjct: 73 VEELSNVYRGAQETNRKLYQELFPIQIMQMCGWLLKVVRWENLNCVH---MEAHGNRRSS 129
Query: 235 PTYPAELWMLSQLRRLMNC 291
PTY LWM+S L+ C
Sbjct: 130 PTYLVMLWMISVASLLITC 148
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 291 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 395
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,418,190
Number of Sequences: 37544
Number of extensions: 491911
Number of successful extensions: 1643
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1642
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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