Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0566.Seq
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             159   1e-39
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   4.6  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  159 bits (387), Expect = 1e-39
 Identities = 72/83 (86%), Positives = 76/83 (91%)
 Frame = +1

Query: 1   AXGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 180
           A GPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV
Sbjct: 426 ARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEV 485

Query: 181 LKIVKQRLIKVDGKVRTDPTYPA 249
            KIVKQRLIK+DGKVRTD TYPA
Sbjct: 486 KKIVKQRLIKIDGKVRTDTTYPA 508



 Score =  132 bits (318), Expect = 3e-31
 Identities = 60/92 (65%), Positives = 72/92 (78%)
 Frame = +3

Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
           MDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD RT
Sbjct: 511 MDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDART 570

Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 530
           IRYPDP IKVND++ +DI T K++D      G
Sbjct: 571 IRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTG 602



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 26/41 (63%), Positives = 33/41 (80%)
 Frame = +1

Query: 559 LGACGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
           +G  G +  RE+H GSFDIVH+KD+TGH FATRL N+F+IG
Sbjct: 613 MGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIG 653



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 14/22 (63%), Positives = 20/22 (90%)
 Frame = +2

Query: 509 FIKFESGNLCMITGGRNLGRVG 574
           +IKF++GN+ M+ GGRN+GRVG
Sbjct: 596 YIKFDTGNMAMVVGGRNMGRVG 617


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +3

Query: 141 EES--SEVCFDRKRSPENCE 194
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -1

Query: 218 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 102
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,352,646
Number of Sequences: 59808
Number of extensions: 552499
Number of successful extensions: 1668
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1665
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)