Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0566.Seq
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   121   4e-28
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.4  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    23   6.0  
AL031635-7|CAB54384.2|  487|Caenorhabditis elegans Hypothetical ...    28   7.1  
AC006834-7|AAF40003.2|  176|Caenorhabditis elegans Lipid deplete...    28   7.1  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  121 bits (292), Expect = 4e-28
 Identities = 56/80 (70%), Positives = 64/80 (80%)
 Frame = +1

Query: 7   GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLK 186
           GPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  K
Sbjct: 3   GPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKK 62

Query: 187 IVKQRLIKVDGKVRTDPTYP 246
           I+ QR+++VDGKVRT   +P
Sbjct: 63  ILTQRVVRVDGKVRTCHKFP 82



 Score =  120 bits (288), Expect = 1e-27
 Identities = 56/92 (60%), Positives = 67/92 (72%)
 Frame = +3

Query: 255 MDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT 434
           MDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DGRT
Sbjct: 86  MDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRT 145

Query: 435 IRYPDPLIKVNDSIQLDIATTKIMDSSSLSLG 530
           IRYPDP +KVND+I  +I+T KI DS     G
Sbjct: 146 IRYPDPHVKVNDTIVFNISTQKITDSVKFEPG 177



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 29/50 (58%), Positives = 36/50 (72%)
 Frame = +1

Query: 532 LVYDHGRP*LGACGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIG 681
           L Y  G   +G  G I  RER PG+ DI+HIKDS GH+FATR++NVF+IG
Sbjct: 179 LAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIG 228



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +2

Query: 512 IKFESGNLCMITGGRNLGRVGTSCPARDIPAPSTL 616
           +KFE GNL  +TGGRN+GRVG       +P  S +
Sbjct: 172 VKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDI 206


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +3

Query: 315 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 446
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 472  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 308
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 23.4 bits (48), Expect(2) = 6.0
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 576 HRVPRETSRLLRHCAHQGLHGTH 644
           H     T   L H  H G HGTH
Sbjct: 654 HHGHHGTHHSLAHHGHHGGHGTH 676



 Score = 23.0 bits (47), Expect(2) = 6.0
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +3

Query: 618 AHQGLHGTHLRHEVEQRVHN 677
           AH G HG H  H      H+
Sbjct: 684 AHHGHHGAHHEHGAHHGAHH 703


>AL031635-7|CAB54384.2|  487|Caenorhabditis elegans Hypothetical
           protein Y47D3B.11 protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 23/70 (32%), Positives = 31/70 (44%)
 Frame = +1

Query: 67  GGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYP 246
           G V   R S    K  + L L +F    L   L G  ++ IV   L+ V  K+R  PT  
Sbjct: 182 GAVTKLRISFIDEKPTKVLKLQVFRPTVLNITLLGLLIILIVFVSLLVVV-KIRCQPTMH 240

Query: 247 AELWMLSQLR 276
            ELW+ +  R
Sbjct: 241 RELWLRALAR 250


>AC006834-7|AAF40003.2|  176|Caenorhabditis elegans Lipid depleted
           protein 5 protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +3

Query: 381 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDSSSLSL 527
           ++TG  N+P   +HD + +   D L K +    + +++ + MD   + L
Sbjct: 20  LSTGKDNLPVTRSHDAKKVELNDILDKPSQKTPVKVSSDETMDIGGVPL 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,481,453
Number of Sequences: 27780
Number of extensions: 393785
Number of successful extensions: 1207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)