Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0565.Seq
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    55   1e-08
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    29   0.72 
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    29   0.95 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    28   1.3  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.8  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    27   3.8  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.8  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    26   5.1  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     26   6.7  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   8.9  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   8.9  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
 Frame = +3

Query: 255 RDLKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGE 434
           R ++A+  Y   + + ++ A    PE+  K L VA +SD+GLCG +H+ +S++IR  L +
Sbjct: 67  RAMEASNKYYRVSDEVFKEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHD 125

Query: 435 PGA-ENIKVICVGDKSRGILQR 497
           P   EN  +  +G+K R  L R
Sbjct: 126 PKTFENTSLCILGEKVRTQLLR 147



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 24/67 (35%), Positives = 38/67 (56%)
 Frame = +2

Query: 533 IGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESATKL 712
           IG   P+F +A Q+++ IL    ++    ++YNKF S VS+      LYT K+I  +  L
Sbjct: 160 IGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFETVMKNLYTTKAINESPNL 219

Query: 713 TAYDSLD 733
           +AY+  D
Sbjct: 220 SAYEVSD 226



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = +1

Query: 160 RAISIRLKSVKNIQKITQSMKMVSAAKYTRA 252
           + I  RLKS+KNI+KIT+++K V+  K TRA
Sbjct: 35  KEIEQRLKSIKNIEKITKTIKTVAQTKLTRA 65


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 674 GASRTGRKRPQT*TCCK*FFRNQTRILR*EWQW 576
           GAS+T   RP + +C    F N+   L+ EW W
Sbjct: 45  GASKTKHGRPWSISCLVYGFPNKVSALKFEWNW 77


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = +3

Query: 324 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLGEPGAENIKVICVGDKSRGI 488
           PPED  P++L   +T+      G+ GA+ TGV    +N L E GA ++ +IC       +
Sbjct: 70  PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128

Query: 489 LQRLY 503
           L  +Y
Sbjct: 129 LMTVY 133


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 566  SQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESATKLTAYDSLDSDVL 745
            S+ +  IL +  +FGS KII  K   +V    S   L  + +I     L    +L +D+ 
Sbjct: 2456 SEFSVLILNAAVKFGSQKIIELKLSDIVCSIISTASLQKEVTIAENGILALGKALLADIP 2515

Query: 746  QSY 754
            QS+
Sbjct: 2516 QSF 2518


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 202 SGYFSQI*DGWKWPFKVAIFLFG 134
           SG+ SQ   GW+W F + + L G
Sbjct: 187 SGFISQSSIGWQWEFWILLILSG 209


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 202 SGYFSQI*DGWKWPFKVAIFLFG 134
           SG+ SQ   GW+W F + + L G
Sbjct: 187 SGFISQSSIGWQWEFWILLILSG 209


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 202 SGYFSQI*DGWKWPFKVAIFLFG 134
           SG+ SQ   GW+W F + + L G
Sbjct: 187 SGFISQSSIGWQWEFWILLILSG 209


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
 Frame = -2

Query: 559 QESRWETSDLISNTN-------DVFPYNLCRIP-RDLSPTQI 458
           + S+W T D +SNT+       D+ PYN  R+  +  SP+++
Sbjct: 281 RNSQWSTVDSLSNTSYKKNRYTDIVPYNCTRVHLKRTSPSEL 322


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 482 RYPAKIVRKHIISVANEIGRLPPTFLDASQLATAILT 592
           +YPA IV    IS+A ++ +LP   +  S  A   LT
Sbjct: 182 KYPAHIVAVASISIACKLQQLPQPIIPRSFFAPPALT 218


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 287 FTIGTSSFQVTSARVYLAADTIFMDCVIFWIFFTDL 180
           F + + SF     RVYL +  +  +  ++W FFT++
Sbjct: 224 FFLNSLSFLKIPFRVYLDSHDLTPNLGLWWYFFTEM 259


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -2

Query: 661 LGVR--DHRLELVVNDFSGTKLVS*GENGSGQLTCVQESRWETSDLI 527
           +G+R  D+R    +  FS   L+  G+NGSG+ T ++  ++ T+ ++
Sbjct: 10  MGIRSFDNRSRESIQFFSPLTLIV-GQNGSGKTTIIECLKYATTGIL 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,037
Number of Sequences: 5004
Number of extensions: 74080
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)