Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0565.Seq
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 41 0.001
07_03_0571 - 19602755-19603831 38 0.011
04_03_0515 + 16698589-16701066 32 0.43
04_01_0551 - 7119130-7119464,7119601-7119985,7121010-7121690 29 4.0
03_01_0207 - 1633177-1633372,1633623-1633688,1633778-1633859,163... 29 5.3
08_01_0204 + 1642169-1642687 28 7.0
01_06_0030 + 25756294-25756575,25756977-25757101,25757276-257573... 28 7.0
12_02_1080 - 25911521-25911922 28 9.3
04_01_0111 - 1136354-1136793,1136878-1136959,1137574-1137657,113... 28 9.3
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/27 (66%), Positives = 25/27 (92%)
Frame = +1
Query: 160 RAISIRLKSVKNIQKITQSMKMVSAAK 240
RA+ R+KSV+NIQKIT++MKMV+A+K
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASK 86
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +3
Query: 324 PPEDDPKQLFVAMTSDRGLCGAVHT---GVSKVIRNRLGEPGAENIKVICVGDKSR 482
P D K + VA+TSD+GLCG +++ VSK + P E+ K + +G+K +
Sbjct: 112 PSVDVKKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGK 166
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/65 (21%), Positives = 31/65 (47%)
Frame = +2
Query: 542 LPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESATKLTAY 721
L F D + + E+ + ++++NKF SV+S+ + + + + +E ++
Sbjct: 218 LQQKFTDVIAVLADDILKNVEYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESESGKV 277
Query: 722 DSLDS 736
LDS
Sbjct: 278 GDLDS 282
>07_03_0571 - 19602755-19603831
Length = 358
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +1
Query: 160 RAISIRLKSVKNIQKITQSMKMVSAAKYTRA 252
R + R+ SV+N QKIT++MK+V+AAK RA
Sbjct: 39 RELRSRIDSVRNTQKITEAMKLVAAAKVRRA 69
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 342 KQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIK--VICVGDKSRGILQR 497
K V +T +RGLCG+ + V K R+ E ++ V+ VG K R
Sbjct: 111 KVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGKKGNAYFIR 164
>04_03_0515 + 16698589-16701066
Length = 825
Score = 32.3 bits (70), Expect = 0.43
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -2
Query: 427 RRLRITLDTPVCTAP--HKPLSEVIATNNCLGSSSGGVTSALS*NCTAPSP*GRAAFRSR 254
RR R T TAP + LS ++A+ S++ T+A + + PSP AAFR R
Sbjct: 57 RRRRSTSVMSQTTAPMSRRRLSSILASTATASSTAASTTTAATASPARPSPPAHAAFRER 116
>04_01_0551 - 7119130-7119464,7119601-7119985,7121010-7121690
Length = 466
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +3
Query: 12 RPTIFFRRLVNFTDKHP*NLQNVGTLRDGCRHPSRGGGLPSPNRNMATLKGH 167
RPT+ R V T P + V + DG S LP P + TL+ H
Sbjct: 44 RPTLVTTRYVLSTTPPPGDPFRVAAISDGFDDASGMAALPDPGEYLRTLEAH 95
>03_01_0207 -
1633177-1633372,1633623-1633688,1633778-1633859,
1633942-1634037,1634413-1634518,1634602-1634661,
1635114-1635234,1635929-1636040,1636118-1636217,
1636328-1636382,1636489-1636595,1636798-1636850,
1636989-1637114,1637909-1638065,1638226-1638421,
1638917-1639073,1639139-1639379,1639475-1639605,
1639704-1639826,1639929-1639984,1640610-1640767,
1640847-1640984,1641070-1641123
Length = 896
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 476 ISRYPAKIVRKHIISVANEIGRLPPTFLDASQL 574
I RY IV + +++ A EI +LPP F D QL
Sbjct: 746 IRRYADVIVHR-LLAAALEIAKLPPLFQDGPQL 777
>08_01_0204 + 1642169-1642687
Length = 172
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/69 (31%), Positives = 30/69 (43%)
Frame = -2
Query: 298 CTAPSP*GRAAFRSRQHGCI*QLTPSSWTV*FSGYFSQI*DGWKWPFKVAIFLFGDGKPP 119
CT P G AF QHG + + T + V SG F+ G+ W A+ + +G
Sbjct: 8 CTTPIAQGAHAFTVYQHGLVKRTTAAGEFV-RSGTFAV--GGYDW----AVRYYPNGDSA 60
Query: 118 PRLGCRHPS 92
CR PS
Sbjct: 61 AEAACRQPS 69
>01_06_0030 +
25756294-25756575,25756977-25757101,25757276-25757313,
25757501-25757611,25757703-25757782,25758264-25758318,
25758465-25758851,25759080-25759223,25759630-25759671,
25759755-25759837
Length = 448
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 436 GSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 323
G PR R L P+C +PL ++A+ +G GG
Sbjct: 317 GEPRNHRWPLQPPLCLQFQQPLPVLLASAGRMGGDVGG 354
>12_02_1080 - 25911521-25911922
Length = 133
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 124 PPPRLGCRHPSRSVPTFCKFYGCLSVKFTSRRKNIVGRQ 8
P P PS S P + YGC++ RR+ + G +
Sbjct: 33 PVPYCPLPSPSLSTPLHARSYGCVATAREERRRRLDGEE 71
>04_01_0111 -
1136354-1136793,1136878-1136959,1137574-1137657,
1137749-1137931,1138263-1138437,1138539-1138777
Length = 400
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -2
Query: 175 GWKWPFKVAIFLFGDGKPPPRLGCRHPSR 89
GW W + A+ + G+ PPPR R
Sbjct: 42 GWAWRPRWALVVVGEAPPPPRAAAEDSCR 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,234,662
Number of Sequences: 37544
Number of extensions: 542571
Number of successful extensions: 1432
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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