Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0565.Seq
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   5e-18
SB_24975| Best HMM Match : ET (HMM E-Value=1)                          31   1.3  
SB_35142| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-13)            29   4.1  
SB_44871| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_57610| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_41104| Best HMM Match : p450 (HMM E-Value=0)                        28   7.2  
SB_52422| Best HMM Match : Nop17p (HMM E-Value=6.5e-13)                28   9.5  
SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)         28   9.5  
SB_12139| Best HMM Match : Autotransporter (HMM E-Value=1.4)           28   9.5  
SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  
SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 35/92 (38%), Positives = 59/92 (64%)
 Frame = +3

Query: 255 RDLKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGE 434
           ++LK+AR YG+GA   Y++ E+    +DPK L V ++SDRGLCG +H+G++K ++  +  
Sbjct: 92  KELKSARAYGDGATALYDKVEIKQESEDPKHLIVVLSSDRGLCGGIHSGLAKAVKASIAG 151

Query: 435 PGAENIKVICVGDKSRGILQRLYGNTSLVLLM 530
             + N+ ++  GDK++ IL R  G   L+  M
Sbjct: 152 NPSRNVGIVSFGDKTKQILSRTLGKNMLMSFM 183



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 30/90 (33%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
 Frame = +2

Query: 491 AKIVRKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDL 670
           ++ + K+++    ++G+ PP F +A+ LA  IL +G++F +G + YN F+SVVS+  S  
Sbjct: 171 SRTLGKNMLMSFMDVGKKPPLFCEATFLAQEILDAGFDFNTGDMFYNVFRSVVSFRASTK 230

Query: 671 PLYTKKSIESAT--KLTAYDSLDSDVLQSY 754
            +Y+  ++ +A    +++YD LDS+V++ Y
Sbjct: 231 SIYSFDNLNNAASDSMSSYDELDSEVIRCY 260



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 25/42 (59%), Positives = 33/42 (78%)
 Frame = +1

Query: 130 HRQTGIWLL*RAISIRLKSVKNIQKITQSMKMVSAAKYTRAD 255
           H   G++     +S+RL+SVKNIQKIT+SMKMVSAAK+ RA+
Sbjct: 50  HFSVGLFFSQNHVSLRLRSVKNIQKITKSMKMVSAAKFGRAE 91


>SB_24975| Best HMM Match : ET (HMM E-Value=1)
          Length = 316

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 298 CTAPSP*GRAAFRSRQHGCI*QLTPSSW 215
           CT  +P   +A RS QH  + Q  PSSW
Sbjct: 51  CTYKTPLSSSALRSHQHATVNQHPPSSW 78


>SB_35142| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-13)
          Length = 302

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 520 TNDVFPYNLCRIPRDLSPTQITL 452
           +ND FP+   R+P+D+ PT+ TL
Sbjct: 81  SNDDFPHKDIRLPKDVVPTKYTL 103


>SB_44871| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = -2

Query: 625 NDFSGTKLVS*GENGSGQLTCVQESRWETSDLISNTNDVFPYNLCRIPRDLSPTQITLMF 446
           ND   T+    GE+ +G +T  +  R     L S+ + VFP + C +      T I+++F
Sbjct: 21  NDIKNTRAQVWGES-AGDITETRGLRGRALSLASSASLVFPSHECLLDPTSCTTGISVLF 79

Query: 445 SAPGSPRRL 419
               S RR+
Sbjct: 80  WFKYSERRM 88


>SB_57610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
 Frame = +3

Query: 450 IKVICVGDKSRGILQRLYGNTSLVL---LMRSDVSHLL-SW 560
           IK++  GDK  G+ + L+ +T+LV    L+ S + +LL SW
Sbjct: 284 IKIVSTGDKEPGLSRDLFADTNLVRFVELLDSVIHYLLPSW 324


>SB_41104| Best HMM Match : p450 (HMM E-Value=0)
          Length = 515

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +2

Query: 494 KIVRKHIISVANEIGRLPP--TFLDASQLATAILTSGYEFGSGKIIYNK-FKSVVSYAQS 664
           K V++ +++ + +    PP  +F+D+S     +    Y  G    ++ K F S +    S
Sbjct: 97  KAVKEVLVTRSADYAGRPPFYSFIDSSLGGKGLALGNY--GPAWRLHRKLFTSSLRQYLS 154

Query: 665 DLPLYTKKSIESATKLTAY 721
           D+PL+  +  E A KL  Y
Sbjct: 155 DIPLFESRVAEQARKLLKY 173


>SB_52422| Best HMM Match : Nop17p (HMM E-Value=6.5e-13)
          Length = 175

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -2

Query: 559 QESRWETSDLISNTNDVFP---YNLCRIPRDLSPTQITLMFSAPG 434
           +ES   TS LIS      P   YN+   P D  P  I L  S PG
Sbjct: 82  EESSKSTSQLISTLEPSIPQPMYNILTEPSDDKPEFIVLEISLPG 126


>SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)
          Length = 490

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 389 CTHWCIQSDPQPSR 430
           C+ WCIQ  PQP R
Sbjct: 324 CSKWCIQGIPQPER 337


>SB_12139| Best HMM Match : Autotransporter (HMM E-Value=1.4)
          Length = 751

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = -2

Query: 124 PPPRLGCRH--PSRSVPTF 74
           PP R GCRH  P RS P+F
Sbjct: 351 PPSRRGCRHSRPGRSSPSF 369


>SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 309 RAEVTPPEDDPKQLFVAMTSDRGLCG 386
           RA  TPPE   K   + + S  GLCG
Sbjct: 263 RARATPPEVTDKMAILRLPSGLGLCG 288


>SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -2

Query: 559 QESRWETSDLISNTNDVFP---YNLCRIPRDLSPTQITLMFSAPG 434
           +ES   TS LIS      P   YN+   P D  P  I L  S PG
Sbjct: 191 EESSKSTSQLISTLEPSIPQPMYNILTEPSDDKPEFIVLEISLPG 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,357,943
Number of Sequences: 59808
Number of extensions: 613502
Number of successful extensions: 1248
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)