Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0565.Seq
(758 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical ... 91 8e-19
AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical ... 91 8e-19
AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical ... 85 5e-17
AF043700-6|AAB97569.2| 443|Caenorhabditis elegans Hypothetical ... 30 1.6
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 29 2.7
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 29 2.7
U88184-3|AAK31519.1| 648|Caenorhabditis elegans Hypothetical pr... 29 3.6
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 29 4.7
Z66521-16|CAA91396.2| 793|Caenorhabditis elegans Hypothetical p... 28 8.3
U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical pr... 28 8.3
AF188715-1|AAF05590.1| 793|Caenorhabditis elegans alanyl-tRNA s... 28 8.3
>AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18a protein.
Length = 299
Score = 91.1 bits (216), Expect = 8e-19
Identities = 43/88 (48%), Positives = 61/88 (69%)
Frame = +2
Query: 494 KIVRKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLP 673
++ I+ NEIGR PP+F DAS A AIL SGY+F +G I++N+FK+VVSY S L
Sbjct: 145 RLYANSILLSGNEIGRAPPSFADASIAAKAILDSGYDFETGTILFNRFKTVVSYETSKLQ 204
Query: 674 LYTKKSIESATKLTAYDSLDSDVLQSYT 757
+ ++I++ L+ YDS+D DVLQSY+
Sbjct: 205 ILPLEAIKAKEALSTYDSVDDDVLQSYS 232
Score = 85.0 bits (201), Expect = 5e-17
Identities = 42/93 (45%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Frame = +3
Query: 255 RDLKAARPYGEGAVQFYER----AEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRN 422
R+LK AR YG GA F++ E ++ KQ+ V +TSDRGLCG VH+ + K +N
Sbjct: 61 RELKGARAYGVGAKTFFDNIDPVVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKN 120
Query: 423 RLGEPGAENIKVICVGDKSRGILQRLYGNTSLV 521
L G + I+V+ +GDKSR LQRLY N+ L+
Sbjct: 121 ILNNAGDKEIRVVAIGDKSRAGLQRLYANSILL 153
Score = 52.8 bits (121), Expect = 3e-07
Identities = 25/30 (83%), Positives = 29/30 (96%)
Frame = +1
Query: 166 ISIRLKSVKNIQKITQSMKMVSAAKYTRAD 255
ISIRLKSVKNIQKIT+SMKMV+AAKY +A+
Sbjct: 31 ISIRLKSVKNIQKITKSMKMVAAAKYAKAE 60
>AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18b protein.
Length = 313
Score = 91.1 bits (216), Expect = 8e-19
Identities = 43/88 (48%), Positives = 61/88 (69%)
Frame = +2
Query: 494 KIVRKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLP 673
++ I+ NEIGR PP+F DAS A AIL SGY+F +G I++N+FK+VVSY S L
Sbjct: 145 RLYANSILLSGNEIGRAPPSFADASIAAKAILDSGYDFETGTILFNRFKTVVSYETSKLQ 204
Query: 674 LYTKKSIESATKLTAYDSLDSDVLQSYT 757
+ ++I++ L+ YDS+D DVLQSY+
Sbjct: 205 ILPLEAIKAKEALSTYDSVDDDVLQSYS 232
Score = 85.0 bits (201), Expect = 5e-17
Identities = 42/93 (45%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Frame = +3
Query: 255 RDLKAARPYGEGAVQFYER----AEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRN 422
R+LK AR YG GA F++ E ++ KQ+ V +TSDRGLCG VH+ + K +N
Sbjct: 61 RELKGARAYGVGAKTFFDNIDPVVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKN 120
Query: 423 RLGEPGAENIKVICVGDKSRGILQRLYGNTSLV 521
L G + I+V+ +GDKSR LQRLY N+ L+
Sbjct: 121 ILNNAGDKEIRVVAIGDKSRAGLQRLYANSILL 153
Score = 52.8 bits (121), Expect = 3e-07
Identities = 25/30 (83%), Positives = 29/30 (96%)
Frame = +1
Query: 166 ISIRLKSVKNIQKITQSMKMVSAAKYTRAD 255
ISIRLKSVKNIQKIT+SMKMV+AAKY +A+
Sbjct: 31 ISIRLKSVKNIQKITKSMKMVAAAKYAKAE 60
>AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18c protein.
Length = 200
Score = 85.0 bits (201), Expect = 5e-17
Identities = 42/93 (45%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Frame = +3
Query: 255 RDLKAARPYGEGAVQFYER----AEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRN 422
R+LK AR YG GA F++ E ++ KQ+ V +TSDRGLCG VH+ + K +N
Sbjct: 61 RELKGARAYGVGAKTFFDNIDPVVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKN 120
Query: 423 RLGEPGAENIKVICVGDKSRGILQRLYGNTSLV 521
L G + I+V+ +GDKSR LQRLY N+ L+
Sbjct: 121 ILNNAGDKEIRVVAIGDKSRAGLQRLYANSILL 153
Score = 52.8 bits (121), Expect = 3e-07
Identities = 25/30 (83%), Positives = 29/30 (96%)
Frame = +1
Query: 166 ISIRLKSVKNIQKITQSMKMVSAAKYTRAD 255
ISIRLKSVKNIQKIT+SMKMV+AAKY +A+
Sbjct: 31 ISIRLKSVKNIQKITKSMKMVAAAKYAKAE 60
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 494 KIVRKHIISVANEIGRLPPTFLDASQLATAIL 589
++ I+ NEIGR PP+F DAS A AIL
Sbjct: 145 RLYANSILLSGNEIGRAPPSFADASIAAKAIL 176
>AF043700-6|AAB97569.2| 443|Caenorhabditis elegans Hypothetical
protein K09H9.2 protein.
Length = 443
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 261 LKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIR 419
L RP+ + + + E +P DP F+ ++ D + GA G S IR
Sbjct: 63 LSKNRPFDQAMNKTMTKMEFSPDYSDPSSEFMLLSVDESVIGAFSEGQSLTIR 115
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -1
Query: 431 AETVADHFGYTSVY-SSAQTSVRGHSNK 351
+E + D+FG+T V+ +SA T V HSNK
Sbjct: 111 SEILFDYFGFTEVHKTSASTLVAKHSNK 138
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -1
Query: 431 AETVADHFGYTSVY-SSAQTSVRGHSNK 351
+E + D+FG+T V+ +SA T V HSNK
Sbjct: 111 SEILFDYFGFTEVHKTSASTLVAKHSNK 138
>U88184-3|AAK31519.1| 648|Caenorhabditis elegans Hypothetical
protein F36H5.8 protein.
Length = 648
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -3
Query: 408 WIHQCVQLRTNLCQRS*QQTIAWGHLQEV*PQPFHRTVLHLHHRDEQLSGHVSTGV 241
WI C++L N R + + G QE+ F+R+++ LH + +L G S +
Sbjct: 425 WIDHCLELTNN--HRLNKLIVEAGDNQEIDMDGFYRSLIGLHIKTLELKGTYSRSI 478
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 28.7 bits (61), Expect = 4.7
Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 2/116 (1%)
Frame = -2
Query: 622 DFSGTKLVS*GENGSGQLTCVQESRWETSDLIS--NTNDVFPYNLCRIPRDLSPTQITLM 449
+ S K + +NG C +SRW T S + P + P +PT +
Sbjct: 124 NISDAKWETLDDNGKNYFVCSYDSRWATKPTPSTMKSTPTTPTTIKSTP--TTPTTMKST 181
Query: 448 FSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGGVTSALS*NCTAPSP 281
+ P +P ++ T TP K T + S+ T+ + T +P
Sbjct: 182 PTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTP 237
>Z66521-16|CAA91396.2| 793|Caenorhabditis elegans Hypothetical
protein W02B12.6a protein.
Length = 793
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 424 VSANLVLRTSR*SVWEINLAVSCKDCTETHH 516
VS+N +L + WE+ A C CTE H+
Sbjct: 173 VSSNRILPFVAENFWEMGAAGPCGPCTEIHY 203
>U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical
protein R05G6.7 protein.
Length = 283
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 545 PPTFLDASQLATAILTSGYEFGSGKI 622
PPTF D + A + GY FG KI
Sbjct: 3 PPTFADLGKSAKDLFNKGYNFGFLKI 28
>AF188715-1|AAF05590.1| 793|Caenorhabditis elegans alanyl-tRNA
synthetase protein.
Length = 793
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 424 VSANLVLRTSR*SVWEINLAVSCKDCTETHH 516
VS+N +L + WE+ A C CTE H+
Sbjct: 173 VSSNRILPFVAENFWEMGAAGPCGPCTEIHY 203
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,110,228
Number of Sequences: 27780
Number of extensions: 434389
Number of successful extensions: 1050
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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