Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0565.Seq
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial... 43 3e-04
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 38 0.005
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 36 0.029
At1g24807.1 68414.m03108 anthranilate synthase beta subunit, put... 28 0.68
At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger) fa... 31 0.83
At5g57890.1 68418.m07242 anthranilate synthase beta subunit, put... 28 5.9
At5g19130.2 68418.m02277 GPI transamidase component family prote... 28 5.9
At5g19130.1 68418.m02276 GPI transamidase component family prote... 28 5.9
At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase (I... 28 5.9
At1g25220.1 68414.m03130 anthranilate synthase beta subunit (ASB... 28 5.9
At1g25155.1 68414.m03123 anthranilate synthase beta subunit, put... 28 5.9
At1g25083.1 68414.m03118 anthranilate synthase beta subunit, put... 28 5.9
At1g24909.1 68414.m03112 anthranilate synthase beta subunit, put... 28 5.9
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 28 7.7
At4g01380.1 68417.m00178 plastocyanin-like domain-containing pro... 28 7.7
>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
(ATPC) identical to SP|Q96250 ATP synthase gamma chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase
Length = 325
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = +3
Query: 324 PPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIR--NRLGEPGAENIKVICVGDKSRGILQR 497
P D K + V ++SD+GLCG +++ V KV R +L + ++ + VG+K++ I+ R
Sbjct: 98 PSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFR 157
Query: 498 LYGNTSLVLLMRSDVSHLLSWTQVS 572
N +VL + + L++ QVS
Sbjct: 158 DSKN-DIVLSVTELNKNPLNYAQVS 181
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/22 (77%), Positives = 22/22 (100%)
Frame = +1
Query: 175 RLKSVKNIQKITQSMKMVSAAK 240
R+KSVKNIQKIT++MKMV+A+K
Sbjct: 51 RMKSVKNIQKITKAMKMVAASK 72
Score = 35.5 bits (78), Expect = 0.039
Identities = 20/70 (28%), Positives = 38/70 (54%)
Frame = +2
Query: 503 RKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYT 682
+ I+ E+ + P + S LA IL + EF + +I+YNKF SVV++ + + +
Sbjct: 160 KNDIVLSVTELNKNPLNYAQVSVLADDILKN-VEFDALRIVYNKFHSVVAFLPTVSTVLS 218
Query: 683 KKSIESATKL 712
+ IE +++
Sbjct: 219 PEIIEKESEI 228
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +1
Query: 160 RAISIRLKSVKNIQKITQSMKMVSAAKYTRA 252
R + R+ SVKN QKIT++MK+V+AAK RA
Sbjct: 54 RELRDRIDSVKNTQKITEAMKLVAAAKVRRA 84
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +3
Query: 342 KQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIK--VICVGDKSRG-ILQRLY 503
K V +T DRGLCG + + K R+ E ++ VI VG K L+R Y
Sbjct: 126 KVALVVVTGDRGLCGGFNNFIIKKAEARIKELKGLGLEYTVISVGKKGNSYFLRRPY 182
>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
(ATPC2) identical to SP|Q01909 ATP synthase gamma chain
2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase;
similar to ATP synthase gamma-subunit GI:21241 from
[Spinacia oleracea]
Length = 386
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/31 (51%), Positives = 24/31 (77%)
Frame = +1
Query: 160 RAISIRLKSVKNIQKITQSMKMVSAAKYTRA 252
R + R+ SVKN QKIT++M++V+AA+ RA
Sbjct: 64 RELRERIDSVKNTQKITEAMRLVAAARVRRA 94
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 354 VAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIK--VICVGDKSRGILQR 497
V +T D+GLCG + V+K R+ E I VI VG K R
Sbjct: 140 VVVTGDKGLCGGFNNAVTKKATLRVQELKQRGIDCVVISVGKKGNAYFSR 189
>At1g24807.1 68414.m03108 anthranilate synthase beta subunit,
putative similar to anthranilate synthase beta chain
GI:403434; similar to ESTs dbj|AV540153.1,
dbj|AV557490.1, gb|AI997696.1, gb|AW004516.1,
dbj|AV521371.1
Length = 235
Score = 28.3 bits (60), Expect(2) = 0.68
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 454 LMFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 323
L+ PG+P+ I+L T + P PL V C+G + GG
Sbjct: 80 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGG 123
Score = 21.8 bits (44), Expect(2) = 0.68
Identities = 10/48 (20%), Positives = 21/48 (43%)
Frame = -2
Query: 589 ENGSGQLTCVQESRWETSDLISNTNDVFPYNLCRIPRDLSPTQITLMF 446
E+ S + S+ ++ + D F YNLC+ ++ + L +
Sbjct: 3 ESNSIPSVVINSSKQNGPIIVIDNYDSFTYNLCQYKQNFENCYLFLQY 50
>At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 302
Score = 31.1 bits (67), Expect = 0.83
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +2
Query: 545 PPTFLDASQLA----TAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESATKL 712
P T + AS L T IL + + G + + ++ S Y+Q + +T +ES T +
Sbjct: 4 PGTEIKASDLTLLVITIILFAIFIVGLASVCF-RWTSRQFYSQESINPFTDSDVESRTSI 62
Query: 713 TAYDSLDSDVLQSY 754
TA LD ++ S+
Sbjct: 63 TAVRGLDEAIINSF 76
>At5g57890.1 68418.m07242 anthranilate synthase beta subunit,
putative strong similarity to anthranilate synthase beta
chain GI:403434 [Arabidopsis thaliana]
Length = 273
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 454 LMFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 323
L+ PG+P+ I+L T + P PL V C+G + GG
Sbjct: 118 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGG 161
>At5g19130.2 68418.m02277 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 696
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 511 VFPYNLCRIPRDLSPTQITLMFSAPGSPRRLRITLDTPVCT 389
+ PY +C++P SPT ++M+ S L + P C+
Sbjct: 514 LLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 554
>At5g19130.1 68418.m02276 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 699
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 511 VFPYNLCRIPRDLSPTQITLMFSAPGSPRRLRITLDTPVCT 389
+ PY +C++P SPT ++M+ S L + P C+
Sbjct: 517 LLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 557
>At2g04400.1 68415.m00444 indole-3-glycerol phosphate synthase
(IGPS) nearly identical to SP|P49572
Length = 402
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 697 LNRLLSVEGQVGLGVRDHRLELVVNDFSGTKLVS*GENG 581
+ R+L +EG +G+ + LE D S TK + GE+G
Sbjct: 304 MGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEGEHG 342
>At1g25220.1 68414.m03130 anthranilate synthase beta subunit (ASB1)
identical to anthranilate synthase beta subunit
GI:403434 from [Arabidopsis thaliana]
Length = 276
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 454 LMFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 323
L+ PG+P+ I+L T + P PL V C+G + GG
Sbjct: 121 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGG 164
>At1g25155.1 68414.m03123 anthranilate synthase beta subunit,
putative strong similarity to anthranilate synthase beta
subunit GI:403434 from (Arabidopsis thaliana)
Length = 222
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 454 LMFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 323
L+ PG+P+ I+L T + P PL V C+G + GG
Sbjct: 67 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGG 110
>At1g25083.1 68414.m03118 anthranilate synthase beta subunit,
putative strong similarity to anthranilate synthase beta
subunit GI:403434 from (Arabidopsis thaliana); similar
to ESTs dbj|AV540153.1, dbj|AV557490.1, gb|AI997696.1,
gb|AW004516.1, dbj|AV521371.1
Length = 222
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 454 LMFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 323
L+ PG+P+ I+L T + P PL V C+G + GG
Sbjct: 67 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGG 110
>At1g24909.1 68414.m03112 anthranilate synthase beta subunit,
putative strong similarity to anthranilate synthase beta
subunit GI:403434 from (Arabidopsis thaliana)
Length = 222
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 454 LMFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 323
L+ PG+P+ I+L T + P PL V C+G + GG
Sbjct: 67 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGG 110
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 476 FISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSNKQLLG 339
F H HL + R AE HF T ++A+ ++ G K++ G
Sbjct: 536 FFRHAAHLSGVPLRMAERGRRHFPLTKSQNTAEDTLSGMLKKKIDG 581
>At4g01380.1 68417.m00178 plastocyanin-like domain-containing
protein
Length = 210
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 550 YFLGRKSVGHCHSHLRIRV 606
YF+ K+ GHC++ L++RV
Sbjct: 152 YFISSKTPGHCYAGLKLRV 170
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,172,775
Number of Sequences: 28952
Number of extensions: 412219
Number of successful extensions: 1067
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -