Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0564.Seq
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 48 9e-07
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 42 1e-04
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 34 0.020
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 29 0.77
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 28 1.0
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 27 1.8
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.3
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 27 2.3
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.3
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 3.1
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.1
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 4.1
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.4
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 7.2
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 25 7.2
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo... 25 9.5
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 9.5
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 25 9.5
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 48.4 bits (110), Expect = 9e-07
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +2
Query: 59 YCEFCFEQYIAPACDKCHAKIKGDCLNAIGKHFHPECFNCVYCGKLFGNNPFFLEDGLPY 238
+C+ C++ A C KC I G + +H +C+ C C L G+ +F+ + P
Sbjct: 365 WCQTCYDNKYAVKCKKCRKPILGISVKGSDGEYHSQCWTCGACNALLGDEGYFMIENTPI 424
Query: 239 C 241
C
Sbjct: 425 C 425
Score = 44.0 bits (99), Expect = 2e-05
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 273 CFACXFPVEAGDRWVDALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKI 428
C +C + AG R + A H QCF C C +NLE F+ + G+ +C +
Sbjct: 258 CHSCGGSLRAG-RIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKFYCHL 308
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 95 ACDKCHAKIK-GDCLNAIGKHFHPECFNCVYCGKLFGNNPFFLEDGLPYC 241
+C C ++ G ++A GK HP+CF C C + + F+ +G YC
Sbjct: 257 SCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKFYC 306
Score = 39.5 bits (88), Expect = 4e-04
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +2
Query: 50 GQLYCEFCFEQYIAPACDKCHAKIKGDCLNAIGKHFHPECFNCVYCGKLFG-NNPFFLED 226
G+ YC + + +P C C I+ ++ FH C C ++F N P D
Sbjct: 302 GKFYCHLDYHEQFSPRCKHCKTPIEDQAVHINNDWFHENHHFCAGCSEVFNVNIPCIYRD 361
Query: 227 GLPYCE 244
L +C+
Sbjct: 362 DLYWCQ 367
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 261 FTTKCFACXFPVEAGDRWVDALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCK 425
+ KC C P+ V + YHSQC+ C C L + +F P C+
Sbjct: 374 YAVKCKKCRKPILGIS--VKGSDGEYHSQCWTCGACNALLGDEGYFMIENTPICR 426
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 62 CEFCFEQYIAPACDKCHAKIKGDCLNAIGKHFHPECFNCVYCGKLFGNNPFFLE-DGLPY 238
CE + + + C C ++G + A+ K FH E F C C +FG N + E +G Y
Sbjct: 168 CETDYFRRLDLLCASCGMALRGYYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVY 227
Query: 239 C 241
C
Sbjct: 228 C 228
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 98 CDKCHAKIKGDCLNAIGKHFHPECFNCVYCGKLFGNNPFFLED 226
C C I G + A+G +H ECF C C L + F ++D
Sbjct: 116 CASCGQVISGQYVRALGNIYHLECFRCHDCNSLVASKFFPIDD 158
Score = 31.1 bits (67), Expect = 0.14
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 243 KQLEELFTTKCFACXFPVEAGDRWVDALNNNYHSQCFNCTVCKKNLEGQSFF 398
K + ++ ++K A V +G ++V AL N YH +CF C C +L FF
Sbjct: 105 KAVRKVSSSKICASCGQVISG-QYVRALGNIYHLECFRCHDC-NSLVASKFF 154
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 273 CFACXFPVEAGDRWVDALNNNYHSQCFNCTVCKKNL-EGQSFFAKGGRPFCKIH 431
C +C + ++ ALN +H + F C++C S++ G+ +C H
Sbjct: 180 CASCGMALRG--YYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYCHYH 231
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = +2
Query: 98 CDKCHAKIKGDCLNAIGKHFHPECFNCVYC 187
C CH+ ++ DC+ H C +C C
Sbjct: 485 CYVCHSALEEDCVLLGEIRCHIGCLSCTKC 514
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 33.9 bits (74), Expect = 0.020
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Frame = +3
Query: 264 TTKCFACXFPVEAGDRWVDALNNNYHSQCFNCTVCKKNLEGQSFF---AKGGRPFC 422
+T CF C + + + + +H CF CT C K LE GRP C
Sbjct: 16 STVCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVC 71
Score = 31.1 bits (67), Expect = 0.14
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +2
Query: 47 NGQLYCEFCFEQYIAPACDKCHAKIKGDCLNAIGKHFHPECFNCVYCGKLFGNNPFFLED 226
+G+ C C A C C +IK L + +H ECF C C K ++ F ++
Sbjct: 66 DGRPVCSSC-----AHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDN 120
Query: 227 GLPYC 241
+C
Sbjct: 121 RTIFC 125
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 273 CFACXFPVEAGDRWVDALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFC 422
C AC ++ D + + ++YH +CF C C+K + +F FC
Sbjct: 78 CTACRMRIK--DYALMSGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFC 125
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = +2
Query: 146 GKHFHPECFNCVYCGKLFGNNPFFL---EDGLPYCEA 247
G +H +CF C C K ++ L DG P C +
Sbjct: 37 GHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSS 73
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 28.7 bits (61), Expect = 0.77
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +2
Query: 50 GQLYCEFCFEQYI--APACDKCHAKIKGDCLNAIGK 151
G LYC FC E ++ + +C C K+ + IG+
Sbjct: 1108 GHLYCSFCLEAWLKHSSSCPMCKTKLNKNNAYYIGE 1143
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 327 NNNYHSQCFNCTVCKKNLEGQSFFA 401
N+ Y QCF C V K+ LE + A
Sbjct: 551 NDTYFGQCFACAVVKRTLERNNITA 575
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 146 GKHFHPECFNCVYCGK 193
GK +H +CF CV C K
Sbjct: 41 GKCWHSDCFKCVNCNK 56
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +3
Query: 336 YHSQCFNCTVCKKNLEGQS-FFAKGGRP--FCKI 428
+HS CF C C K L+ S F++ + FCK+
Sbjct: 44 WHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKL 77
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 361 RCVKRTSKDRASSPREVGLSVKYTPVKXPIKIIYNSDTVYSTTTF 495
+C + K S+P E KY P PI++ + V S+ TF
Sbjct: 9 KCDSSSIKHVPSTPLETNCPDKYNPKTWPIRLKVRNVIVISSMTF 53
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 361 RCVKRTSKDRASSPREVGLSVKYTPVKXPIKIIYNSDTVYSTTTF 495
+C + K S+P E KY P PI++ + V S+ TF
Sbjct: 9 KCDSSSIKHVPSTPLETNCPDKYNPKTWPIRLKVRNVIVISSMTF 53
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 361 RCVKRTSKDRASSPREVGLSVKYTPVKXPIKIIYNSDTVYSTTTF 495
+C + K S+P E KY P PI++ + V S+ TF
Sbjct: 9 KCDSSSIKHVPSTPLETNCPDKYNPKTWPIRLKVRNVIVISSMTF 53
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 495 SSGFALPITPPGFGTPSP 548
SSG ++P PPGFG P
Sbjct: 450 SSGASIPSAPPGFGYQQP 467
>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 237
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 413 PTSLGEEALSFEVLFTHRAVEALTVVVIVER 321
P +GE ++S E +FTH VE++ + + +R
Sbjct: 104 PLVVGEASVSLEDIFTHGTVESVIPLFMKKR 134
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 138 TPSVNTSIQSASTAFIAESCSETTR 212
TP++++S+Q S AFI S S T+
Sbjct: 332 TPTISSSVQVNSLAFITSSLSAITK 356
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 83 IAQNRIHSRAVRSLLRTPLVLE 18
IAQ+R SRAVR+ L +P V E
Sbjct: 884 IAQSRYGSRAVRACLESPDVTE 905
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -2
Query: 619 SVLRMSE--NSPPSKWRGVSNFRVLCGDGV 536
S+L +SE + PP++W G VLC D V
Sbjct: 412 SLLSVSEVTSHPPTEWTGSPLAHVLCSDVV 441
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/44 (29%), Positives = 16/44 (36%)
Frame = +2
Query: 98 CDKCHAKIKGDCLNAIGKHFHPECFNCVYCGKLFGNNPFFLEDG 229
C H +K + LN G H C + K G N E G
Sbjct: 362 CGGAHIWLKREDLNHGGSHKINNCIGQILLAKRLGKNRIIAETG 405
>SPCC16A11.01 ||SPCC63.15|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 394 SSPREVGLS-VKYTPVKXPIKIIYNSDTVYSTTTFRPV 504
+S E G+S + T + P+ +YN D +TTT RPV
Sbjct: 291 ASATEPGVSNIPETRPERPV--VYNMDVSQTTTTTRPV 326
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -1
Query: 347 LTVVVIVERIDPPVAR--LHGESASETFCCKELFQLLRSMAVRLLRRTG 207
+ +++I E++DPPVA+ L GE+ F L +M + LLR G
Sbjct: 602 IVILMIDEKMDPPVAKSMLKGEADR----LDSAFHLSYNMILNLLRVEG 646
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 9.5
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -1
Query: 374 LFTHRAVEALTVVV--IVERIDPPVARLHGESASETF-CCKELFQLLRSMAVRLLRRTGC 204
LFT + AL+V+ + PP R S + F C L +M LR+T
Sbjct: 118 LFTGLTIGALSVLSPGYQSEVAPPQIRGAVVSTYQLFQTCGTLIAACINMGTHKLRKTAS 177
Query: 203 FRTTF 189
+RT+F
Sbjct: 178 WRTSF 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,821
Number of Sequences: 5004
Number of extensions: 52242
Number of successful extensions: 198
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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