Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0564.Seq
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   1.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.8  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 583 KWRGVSNFRVLCGDGVPNPGGVIGN 509
           +W G +   +L  DGVP+   VI N
Sbjct: 72  RWNGKTFVTILRNDGVPSSLNVISN 96


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 360 TVCKKNLEGQSFFAKGGRPFCKIHAR*KXNKNN 458
           TV   N + +S+F +GGR + K       N NN
Sbjct: 8   TVSYTNKKDESYFDEGGRSYGKGRGFIIQNNNN 40


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +2

Query: 83  YIAPACDK---CHAKIKGDCLNAIGKHFHPECFNCVYCGKLFGNN 208
           Y+  AC K   C  ++K       G+    + + C  CGK FG N
Sbjct: 204 YVCKACGKGFTCSKQLKVHTRTHTGE----KPYTCDICGKSFGYN 244


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 489 YFSSGFALPITPPGFGTPS 545
           Y S+  A  I PP  GTPS
Sbjct: 835 YMSTTMAGVIYPPVIGTPS 853


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,375
Number of Sequences: 438
Number of extensions: 3991
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)