Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0564.Seq
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 43 2e-04
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 41 8e-04
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 39 0.003
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 39 0.003
At2g39830.1 68415.m04892 LIM domain-containing protein contains ... 38 0.008
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 37 0.010
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 37 0.010
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 36 0.018
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 33 0.16
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 33 0.22
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 31 0.50
At3g50010.1 68416.m05468 DC1 domain-containing protein contains ... 31 0.50
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 30 1.5
At2g14850.1 68415.m01687 expressed protein 29 2.7
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 29 3.5
At3g53810.1 68416.m05945 lectin protein kinase, putative similar... 29 3.5
At1g61840.1 68414.m06978 DC1 domain-containing protein similar t... 28 4.7
At1g45243.1 68414.m05188 DC1 domain-containing protein contains ... 28 6.2
At2g35450.1 68415.m04343 amidohydrolase family similar to fluore... 27 8.2
At1g74940.1 68414.m08695 senescence-associated protein-related s... 27 8.2
At1g26330.1 68414.m03211 hypothetical protein 27 8.2
At1g19200.1 68414.m02390 senescence-associated protein-related s... 27 8.2
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Frame = +2
Query: 98 CDKCHAKIK-GDCLNAIGKHFHPECFNCVYCGK-----LFGNNPFFLEDGLPYCEAIG 253
CD C + I+ G ++A+G ++HPECF C YC K + +PF+ E P+ E G
Sbjct: 201 CDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEYKEHPFWKEKYCPFHEVDG 258
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 273 CFACXFPVEAGDRWVDALNNNYHSQCFNCTVCKK 374
C C +E G R V AL N+H +CF C C K
Sbjct: 201 CDGCKSAIEYG-RSVHALGVNWHPECFCCRYCDK 233
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = +3
Query: 270 KCFACXFPVEAGDRWVDALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKIH 431
KC AC V A + + A YH CF CT CK L+ S+ + G +CK H
Sbjct: 9 KCKACEKTVYAVEL-LSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPH 61
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 98 CDKCHAKIKG-DCLNAIGKHFHPECFNCVYCGKLFGNNPFFLEDGLPYCE 244
C C + + L+A G +H CF C +C + + +G+ YC+
Sbjct: 10 CKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCK 59
Score = 27.9 bits (59), Expect = 6.2
Identities = 24/96 (25%), Positives = 40/96 (41%)
Frame = +3
Query: 144 SVNTSIQSASTAFIAESCSETTRSS*KTDCHTAKQLEELFTTKCFACXFPVEAGDRWVDA 323
S N + QS + + +S E TR+ + + E+ T C +P+E V
Sbjct: 71 SFNKNFQSPAKS-ADKSTPELTRTPSRVAGRFSGTQEKCAT--CSKTVYPIEK----VTV 123
Query: 324 LNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKIH 431
+ YH CF C+ + ++ A G +CK H
Sbjct: 124 ESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHH 159
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = +3
Query: 270 KCFACXFPVEAGDRWVDALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKIH 431
KC AC V D + N YH CF CT CK L ++ + G +CK H
Sbjct: 9 KCKACDKTVYVMDL-LTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKPH 61
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 95 ACDKCHAKIKGDCLNAIGKHFHPECFNCVYC-GKLFGNNPFFLEDGLPYCE 244
ACDK + D L G +H CF C +C G L +N + DG+ YC+
Sbjct: 12 ACDKTVYVM--DLLTLEGNTYHKSCFRCTHCKGTLVISN-YSSMDGVLYCK 59
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +3
Query: 270 KCFACXFPVEAGDRWVDALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKIH 431
KC C V ++ V +YH CF CT L S+ + G +CK+H
Sbjct: 105 KCATCKKTVYPLEK-VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVH 157
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = +3
Query: 264 TTKCFACXFPVEAGDRWVDALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKIH 431
T KC AC V D+ + A N YH CF C CK L+ ++ + G +C+ H
Sbjct: 7 TQKCMACDKTVYLVDK-LTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 270 KCFACXFPVEAGDRWVDALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKIH 431
KC C V ++ V YH CF CT + ++ A G+ +CK H
Sbjct: 109 KCVGCDKTVYPIEK-VSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHH 161
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/74 (25%), Positives = 29/74 (39%)
Frame = +2
Query: 98 CDKCHAKIKGDCLNAIGKHFHPECFNCVYCGKLFGNNPFFLEDGLPYCEAIGRALYNKMF 277
CDK I+ +N G +H CF C + G + + +G YC+ L +
Sbjct: 113 CDKTVYPIEKVSVN--GTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLIKEKG 170
Query: 278 RLXIPRGGGRQVGR 319
L GGG +
Sbjct: 171 NLSQLEGGGENAAK 184
>At2g39830.1 68415.m04892 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 503
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 98 CDKCHAKI-KGDCLNAIGKHFHPECFNCVYCG 190
C C++ I G+ L +G FHPECF C CG
Sbjct: 162 CGGCNSDIGSGNYLGCMGTFFHPECFRCHSCG 193
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +2
Query: 98 CDKCHAKI-KGDCLNAIGKHFHPECFNCVYCGKLFGNNPFFLEDGLPYCEAIGRALYN 268
C C+ +I G LN + +HPECF C C + F P+ +A R Y+
Sbjct: 172 CAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYH 229
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +3
Query: 270 KCFACXFPVEAGDRWVDALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKIH 431
KC C V D + YH CF CT CK L+ ++ + G +CK H
Sbjct: 9 KCNVCDKTVYVVDM-LSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTH 61
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +2
Query: 98 CDKCHAKIKGDCLNAIGKHFHPECFNCVYCGKLFGNNPFFLEDGLPYCEAIGRALYNK 271
CDK + D L+ G +H CF C +C + + DG+ YC+ L+ +
Sbjct: 13 CDKTVYVV--DMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQLFKE 68
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +2
Query: 68 FCFEQYIAPACDKCHAKIKGDCLNAIGKHFHPECFNCVYCGKLFGNNPFFLEDGLPYCEA 247
FC Q AC+K ++ + G+ FH CF C + G ++ + D + YC
Sbjct: 97 FCGTQDKCAACEKTVYPLEK--IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYC-- 152
Query: 248 IGRALYNKMF 277
R +N++F
Sbjct: 153 --RHHFNQLF 160
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +3
Query: 270 KCFACX---FPVEAGDRWVDALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKIH 431
KC AC +PVE + A +YH CF C+ CK L+ ++ + G +C+ H
Sbjct: 9 KCRACEKTVYPVEL----LSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPH 61
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 95 ACDKCHAKIKGDCLNAIGKHFHPECFNCVYCGKLFGNNPFFLEDGLPYC 241
AC+K + + L+A G +H CF C +C + + +G+ YC
Sbjct: 12 ACEKTVYPV--ELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYC 58
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 98 CDKCHAKIK-GDCLNAIGKHFHPECFNCVYC 187
C C + I+ G +NA G +HP+CF C+ C
Sbjct: 1240 CKDCKSAIEDGISINAYGSVWHPQCFCCLRC 1270
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 267 TKCFACXFPVEAGDRWVDALNNNYHSQCFNCTVCKK 374
+KC C +E G ++A + +H QCF C C++
Sbjct: 1238 SKCKDCKSAIEDGIS-INAYGSVWHPQCFCCLRCRE 1272
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +3
Query: 264 TTKCFACXFPVEAGDRWVDALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKIH 431
T KC AC V D + YH CF C+ C L ++ + G +CK H
Sbjct: 8 TDKCKACDKTVYVMDL-MTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +3
Query: 270 KCFACXFPVEAGDRWVDALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKIH 431
KC AC V ++ + +YH CF C L S+ A G +CK+H
Sbjct: 106 KCAACKKTVYPLEK-MTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVH 158
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 146 GKHFHPECFNCVYCGKLFGNNPFFLEDGLPYCE 244
G+ +H CF C + G ++ + DG+ YC+
Sbjct: 124 GESYHKTCFRCAHSGCPLTHSSYAALDGVLYCK 156
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 31.5 bits (68), Expect = 0.50
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 336 YHSQCFNCTVCKKNLEGQSFFAKGGRPFCKI 428
+H +CF C C K + F G RP+ K+
Sbjct: 5 WHPECFCCNACDKPIIDYEFSMSGNRPYHKL 35
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 143 IGKHFHPECFNCVYCGKLFGNNPFFLEDGLPY 238
+G +HPECF C C K + F + PY
Sbjct: 1 MGGVWHPECFCCNACDKPIIDYEFSMSGNRPY 32
>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 769
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 315 VDALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFCKIHAR*KXNKNNLQLG 470
V L NN+H C +CKK ++FF G +C +K + LG
Sbjct: 716 VSVLPNNHHMSRPFCFICKKRCPHKTFFQCNGFEYCSRSCLLTKSKEVIYLG 767
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 98 CDKCHAKIKGD-CLNAIGKHFHPECFNCVYCGK 193
C C++ +K + +N +G +HP CF C C K
Sbjct: 347 CGGCNSAVKHEESVNILGVLWHPGCFCCRSCDK 379
>At2g14850.1 68415.m01687 expressed protein
Length = 291
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 68 IHSRAVRSLLRTPLVLERPPPR 3
+H+R VRS+L+ V + PPPR
Sbjct: 63 LHNRLVRSILKNASVAKSPPPR 84
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 98 CDKCHAKIK-GDCLNAIGKHFHPECFNCVYCGK 193
C C+ ++ G +N +G +HP CF C C K
Sbjct: 286 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHK 318
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +3
Query: 273 CFACXFPVEAGDRWVDALNNNYHSQCFNCTVCKK 374
C C F VE G V+ L +H CF C C K
Sbjct: 286 CGGCNFAVEHGGS-VNILGVLWHPGCFCCRACHK 318
>At3g53810.1 68416.m05945 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 677
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Frame = +3
Query: 90 HPPVTNVMLKLKATV*TPS-----VNTSIQSASTAFIAE 191
HPP+T++ L+ ATV TP+ NTS+Q AF E
Sbjct: 33 HPPLTDISLQGLATV-TPNGLLKLTNTSVQKTGHAFCTE 70
>At1g61840.1 68414.m06978 DC1 domain-containing protein similar to
hypothetical protein GI:3184279 from [Arabidopsis
thaliana]; contains Pfam profile PF03107: DC1 domain
Length = 814
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 98 CDKCHAKIKGDCLNAIGKHFHPECFNCVYCGKLF 199
C+ + G C G +F + + CVYC K++
Sbjct: 290 CNNKEFNVDGGCDICSGSNFGTDYYFCVYCDKIY 323
>At1g45243.1 68414.m05188 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 263
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 315 VDALNNNYHSQCFNCTVCKKNLEGQSFFAKGGRPFC 422
VD L NN H C+ CK ++F + G FC
Sbjct: 220 VDVLPNNQHMSRPICSFCKNRCPYKTFLIRLGFRFC 255
>At2g35450.1 68415.m04343 amidohydrolase family similar to fluorene
degradation (FldB) protein (GI:7573256) [Sphingomonas
sp. LB126]; similar to 2-pyrone-4,6-dicarboxylic acid
hydrolase (GI:3738249) [Sphingomonas paucimobilis];
contains Pfam PF04909: Amidohydrolase family
Length = 302
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 206 NPFFLEDGLPYCEAIGRALYNKMFRLXIPRG 298
NP+ G A+G+AL++K L +P G
Sbjct: 123 NPYLWPSGQKMTNAVGKALFSKAGELCVPVG 153
>At1g74940.1 68414.m08695 senescence-associated protein-related
similar to senescence-associated protein SAG102
(GI:22331931) [Arabidopsis thaliana]
Length = 222
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 354 NCTVCKKNLEGQSFFA-KGGRPFCKIHAR 437
+C +CKK L+G+ + KG FC R
Sbjct: 153 SCCLCKKKLQGKDIYMYKGEMGFCSAECR 181
>At1g26330.1 68414.m03211 hypothetical protein
Length = 1196
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -1
Query: 167 TLDGSVYRWRLN--SRL*F*HDICHRRVLCIA 78
TLDG VY W L+ ++L HD +RV CI+
Sbjct: 1141 TLDGLVYMWDLSTGTKLGSLHDFKGQRVSCIS 1172
>At1g19200.1 68414.m02390 senescence-associated protein-related
similar to senescence-associated protein SAG102
(GI:22331931) [Arabidopsis thaliana];
Length = 215
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 354 NCTVCKKNLEGQSFFA-KGGRPFCKIHAR 437
+C +CKK L+G+ + KG FC R
Sbjct: 153 SCCLCKKKLQGKDIYMYKGDEGFCSKECR 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,096,806
Number of Sequences: 28952
Number of extensions: 297544
Number of successful extensions: 974
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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