Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0563.Seq
         (608 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp. ...    90   3e-17
UniRef50_Q8GEF9 Cluster: Putative uncharacterized protein; n=1; ...    72   1e-11
UniRef50_A0D095 Cluster: Chromosome undetermined scaffold_33, wh...    33   7.0  
UniRef50_Q4P5T7 Cluster: Putative uncharacterized protein; n=1; ...    33   7.0  

>UniRef50_A7BPF2 Cluster: LacZ alpha peptide; n=1; Beggiatoa sp.
           SS|Rep: LacZ alpha peptide - Beggiatoa sp. SS
          Length = 73

 Score = 90.2 bits (214), Expect = 3e-17
 Identities = 48/72 (66%), Positives = 48/72 (66%)
 Frame = -2

Query: 496 DAPCSGALSAAGVVVTRSVXXXXXXXXXXXXXXXXXXXXXXXAGFPRQALNRGLPLGFRF 317
           DAPCSGALSAAGVVVTRSV                       AGFPRQALNRGLPLGFRF
Sbjct: 2   DAPCSGALSAAGVVVTRSVTATLASALAPAPFAFFPSFLATFAGFPRQALNRGLPLGFRF 61

Query: 316 SALWHLDPKKLD 281
           SAL HLDPKKLD
Sbjct: 62  SALRHLDPKKLD 73


>UniRef50_Q8GEF9 Cluster: Putative uncharacterized protein; n=1;
           Erwinia amylovora|Rep: Putative uncharacterized protein
           - Erwinia amylovora (Fire blight bacteria)
          Length = 99

 Score = 71.7 bits (168), Expect = 1e-11
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = +1

Query: 508 SGKCARNPYLFIFLNTFKYVSAHDTITLINASI 606
           SGKCARNPYLFIFLNTFKYVSAH+TITLINASI
Sbjct: 27  SGKCARNPYLFIFLNTFKYVSAHETITLINASI 59


>UniRef50_A0D095 Cluster: Chromosome undetermined scaffold_33, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_33,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1173

 Score = 32.7 bits (71), Expect = 7.0
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 155 VYSFDL*GILPISAYWLKNELI*QKFNANFNKILTLTI 42
           +++F L G L    +WLKN+    KF++ F ++L L +
Sbjct: 665 IFNFSLQGALSYIDFWLKNQHFDDKFSSTFTQLLLLAL 702


>UniRef50_Q4P5T7 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 779

 Score = 32.7 bits (71), Expect = 7.0
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -1

Query: 464 GCGGYAQRDRYTCQRPSARSFRFLPFLSRHVRRLSPSSSKSG 339
           G GGY+QR +    R S R+F   P L R + R    S +SG
Sbjct: 292 GSGGYSQRHKSASSRESIRTFFPAPSLPRLISRPGSQSRESG 333


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 574,768,867
Number of Sequences: 1657284
Number of extensions: 11207808
Number of successful extensions: 24285
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24277
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)