Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0561.Seq
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    28   1.2  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    27   3.6  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   4.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.4  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   8.4  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   8.4  

>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 422 EYQENHQIDLYSDPRKLRKVHPAGEAVEKILT 327
           E++   +ID+  DPR LR++  A E  ++ L+
Sbjct: 246 EFKRKQKIDISDDPRALRRLRSACERAKRALS 277


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/32 (31%), Positives = 23/32 (71%)
 Frame = -1

Query: 422 EYQENHQIDLYSDPRKLRKVHPAGEAVEKILT 327
           E++E ++ID+ S+P+   ++  A E ++K+L+
Sbjct: 250 EFKEKYKIDVLSNPKATFRLATAVERLKKVLS 281


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +2

Query: 389 SRGQFGGFPG---TPYGAGSAAPYNYQPPPDMFSSIPSQYRMAQAGVQLLANQGSLETVL 559
           +R + GG PG     +G G A P+  +  P    S PSQ   AQ  V       SLE + 
Sbjct: 161 TRTRGGGMPGGFANMFGGGGAGPHARRSHPSFGGSRPSQ-PPAQNEVITRPLNVSLEDLF 219

Query: 560 VQCS 571
             C+
Sbjct: 220 TGCT 223


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 12   GLPRGVHMSTSNTISPLAADLNLKIASVKK 101
            GL   V  S +NT++P+ +   L IASVKK
Sbjct: 2056 GLIFAVVNSDTNTLAPIGSSGELCIASVKK 2085


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 85   SLVLRRSGRCLLLRKIRRNYNLLDLKKPIQK 177
            S+ +  SG  L + KIR+ ++ L  + P+Q+
Sbjct: 1378 SITINNSGEDLFISKIRKGHSPLIFRLPLQR 1408


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -1

Query: 446 GPLNRRHMEY-QENHQIDLYSDP--RKLRKVHPAGEAVEKILTIAVMS 312
           G L  R+ +Y +E+H+ DL       KLR +   G+A E + TI  MS
Sbjct: 341 GDLLARYWKYFEESHKFDLNLQVYHEKLRNLVQQGQAAECLNTIKRMS 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,375
Number of Sequences: 5004
Number of extensions: 53826
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)