Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0561.Seq
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524...    31   0.94 
01_06_1682 - 39130696-39131705,39132355-39132583                       30   1.6  
08_02_0957 + 23033602-23034749,23035519-23035765,23036598-230367...    29   2.9  
01_06_1328 + 36347963-36347984,36348609-36348764,36349083-363492...    29   3.8  
10_08_0046 + 14411844-14413154,14413753-14413800,14413879-144139...    29   5.0  
06_01_1085 - 8886868-8887556,8887629-8888574                           28   6.6  
01_07_0082 - 40965947-40967023                                         28   6.6  

>01_05_0669 -
           24152057-24152110,24152224-24152308,24152401-24152486,
           24153129-24154341,24154441-24154529,24154607-24154639,
           24154674-24154859,24155290-24155380,24155588-24155622,
           24155736-24155817,24155968-24156020,24156404-24156469,
           24156752-24156820,24156821-24156984,24157925-24158432,
           24158543-24158602
          Length = 957

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +2

Query: 413 PGTPYGAGSAAPYNYQPPP 469
           PG PYGA    PYNY PPP
Sbjct: 105 PGPPYGA---VPYNYGPPP 120


>01_06_1682 - 39130696-39131705,39132355-39132583
          Length = 412

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 413 PGTPYGAGSAAP--YNYQPPPDMFSSIPSQYR 502
           P  PYG  S  P    Y PPP  F+S P QY+
Sbjct: 259 PPPPYGYNSPIPPTNKYLPPPYYFNSPPPQYQ 290


>08_02_0957 +
           23033602-23034749,23035519-23035765,23036598-23036744,
           23036849-23037076
          Length = 589

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 561 TRTVSKLP*LAKSCTPACAILYWLGILENISGGG 460
           TR+  K P    S  P  ++LYWL +L N S  G
Sbjct: 144 TRSALKAPGTPHSWPPLLSVLYWLTLLVNSSESG 177


>01_06_1328 +
           36347963-36347984,36348609-36348764,36349083-36349261,
           36349347-36349442,36349525-36349594,36349635-36349705,
           36350654-36351286
          Length = 408

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 204 KPTQQLQSPPPQHYNHVAIREGTVGYQ 284
           +PT+Q+ + P  + NH   RE TVG Q
Sbjct: 281 RPTEQVSARPSDNQNHRGAREFTVGRQ 307


>10_08_0046 +
           14411844-14413154,14413753-14413800,14413879-14413992,
           14414218-14414496,14414602-14414715,14415210-14415282,
           14415973-14416073
          Length = 679

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 413 ENHQIDLYSDPRKLRKVHPA-GEAVEKILTIAVMS*TTWQAATELIA 276
           E+  +DLY   R L  +H + G+ +EKILT    +   W A T  +A
Sbjct: 599 EDKAVDLYVLERALISMHSSCGDVMEKILTAYRKASKQWCATTNKLA 645


>06_01_1085 - 8886868-8887556,8887629-8888574
          Length = 544

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 218 IAVPTASTLQPRGYQGGYGGLSVPSPPAM 304
           + V   S L+  G  GG GG ++ SPPA+
Sbjct: 21  LVVAVRSYLRSGGADGGRGGAAITSPPAL 49


>01_07_0082 - 40965947-40967023
          Length = 358

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = +2

Query: 407 GFPGTPY----GAGSAAPYNYQPPPDMFSSIPSQYRMAQAG 517
           G P T Y    G  +AAPY   PPP      P+Q    QAG
Sbjct: 234 GEPVTAYPAAAGPSTAAPYGTAPPPQYGYGYPAQPPPPQAG 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,080,109
Number of Sequences: 37544
Number of extensions: 418383
Number of successful extensions: 1390
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)