Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0561.Seq
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47668| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_44876| Best HMM Match : F5_F8_type_C (HMM E-Value=0.012)            29   2.9  
SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5)                29   5.1  
SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_31884| Best HMM Match : Rhabdo_M1 (HMM E-Value=0.36)                28   9.0  
SB_21487| Best HMM Match : MAM (HMM E-Value=0)                         28   9.0  
SB_51172| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_47668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 21  RGVHMSTSNTISPLAADLNLKIASVKKVWEMPAVAENTEELQFTGFEE 164
           RGV ++  +T+SP+  D++ K  + + VW   + +  T     TGFE+
Sbjct: 52  RGVLLAIKSTLSPIRCDVDTK--NAEGVWAKVSQSRTTPSPSCTGFEQ 97


>SB_44876| Best HMM Match : F5_F8_type_C (HMM E-Value=0.012)
          Length = 190

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 9   LGLPRGVHMSTSNTISPLAADLNLKIASVKKVWEMPAVAENTEE 140
           L   R + +S S  +SP AADLNL+   VK   ++P+   NT +
Sbjct: 133 LSSKRWLRLSLSPLLSPFAADLNLRDILVKA--KLPSDRSNTNQ 174


>SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5)
          Length = 325

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/78 (25%), Positives = 32/78 (41%)
 Frame = +3

Query: 18  PRGVHMSTSNTISPLAADLNLKIASVKKVWEMPAVAENTEELQFTGFEETNTESAPPNVC 197
           P   +  T   I+P   ++N +  S K V +    AEN  +L F  F+     S   +  
Sbjct: 185 PNFANKPTCRLINPTKPEIN-QWKSTKAVIDWFKAAENKHQLNFICFDIVEFYSLSSSSS 243

Query: 198 KVKPTQQLQSPPPQHYNH 251
               +  L +P   HY+H
Sbjct: 244 SQSLSTTLATPCHYHYHH 261


>SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = +3

Query: 144 QFTGFEETNTESAP-PNVCKVKPTQQLQSPPPQHYNHVAIREGTVGYQFRR 293
           Q   +    T + P PN      TQQ    P  HY+H+        Y++RR
Sbjct: 104 QHQQYHHPTTPTLPSPNNTNTTITQQHHDQPHLHYHHLTTTSQHQAYRYRR 154


>SB_31884| Best HMM Match : Rhabdo_M1 (HMM E-Value=0.36)
          Length = 456

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +3

Query: 75  NLKIASVKKVWEMPAVAENTEELQFTGFEETNTESAPPNVCKVKPTQQLQSPPPQHYNHV 254
           N  +A +KK       +++ EE   TG EE+  ESAPP+  K K  +  QS   + +  V
Sbjct: 265 NTPLARLKKT---KVQSKSQEEESDTG-EESGPESAPPSQQKRKKPESSQSDVDEEFESV 320


>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
          Length = 874

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -3

Query: 363 PPC--WGSC*EDPNNC-CDELNNMAGGDGTDS 277
           PPC  +GS  E P+NC CDE   +A   GT S
Sbjct: 22  PPCLCFGSAQECPSNCSCDESKGIATCAGTIS 53


>SB_51172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 386 QSRGQFGGFPGTPYGAGSAAPYNYQPPPDMFSSIPSQ 496
           Q    + G PG PY A   +PY    PP  +++ P Q
Sbjct: 109 QQSHSYPGQPGQPYQAQGQSPYQQNQPP--YNAPPQQ 143


>SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 464 PPDMFSSIPSQYRMAQAGVQLLANQGSLETVLVQCS 571
           P D+++S+P + R+  A ++L A  G    +L +CS
Sbjct: 413 PEDIYNSLPQKPRLQDANIRLSAYGGMKIPLLGKCS 448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,935,009
Number of Sequences: 59808
Number of extensions: 430318
Number of successful extensions: 1088
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)