Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0561.Seq
(731 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100305-5|AAN65285.1| 353|Caenorhabditis elegans Hypothetical ... 30 1.9
AF100305-4|AAC68916.2| 426|Caenorhabditis elegans Hypothetical ... 30 1.9
AF100305-3|AAL65795.1| 426|Caenorhabditis elegans Hypothetical ... 30 1.9
Z77135-2|CAB00879.1| 769|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z68134-1|CAA92226.2| 492|Caenorhabditis elegans Hypothetical pr... 29 3.4
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 29 3.4
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 29 3.4
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 29 4.5
AC006624-3|AAF39786.2| 301|Caenorhabditis elegans Hypothetical ... 28 5.9
Z83234-5|CAB70171.2| 640|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AF100305-5|AAN65285.1| 353|Caenorhabditis elegans Hypothetical
protein W04B5.3c protein.
Length = 353
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 413 PGTPYGAGSAAPYNYQPPPDMFSSIPSQYRMA 508
P TP GA +PY P P SS+P Y A
Sbjct: 261 PPTPAGAAYTSPYTSVPMPQPPSSVPLSYTPA 292
>AF100305-4|AAC68916.2| 426|Caenorhabditis elegans Hypothetical
protein W04B5.3a protein.
Length = 426
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 413 PGTPYGAGSAAPYNYQPPPDMFSSIPSQYRMA 508
P TP GA +PY P P SS+P Y A
Sbjct: 261 PPTPAGAAYTSPYTSVPMPQPPSSVPLSYTPA 292
>AF100305-3|AAL65795.1| 426|Caenorhabditis elegans Hypothetical
protein W04B5.3b protein.
Length = 426
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 413 PGTPYGAGSAAPYNYQPPPDMFSSIPSQYRMA 508
P TP GA +PY P P SS+P Y A
Sbjct: 261 PPTPAGAAYTSPYTSVPMPQPPSSVPLSYTPA 292
>Z77135-2|CAB00879.1| 769|Caenorhabditis elegans Hypothetical
protein T16A9.4 protein.
Length = 769
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -1
Query: 443 PLNRRHMEYQENHQIDLYSDPRKLRKVHPAGEAVEKILTIAVMS*TTWQAATELIAH 273
PL+R M +Q Q+D Y P + PAG LT+ V + T+ +I H
Sbjct: 546 PLDRS-MWFQSPAQVDAYYAPNNNEMIFPAGIMQFPFLTLGVPNYITYGMVGAVIGH 601
>Z68134-1|CAA92226.2| 492|Caenorhabditis elegans Hypothetical
protein T27A8.1 protein.
Length = 492
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = -1
Query: 461 VGSYRGPLNRRHMEYQ--ENHQIDLYSDPRKLRKVHPAGEAVE-KILTIAVMS 312
+G +R PLN HM Y +H +L+ L ++ AG++V+ + L + V+S
Sbjct: 47 IGPFRDPLNFSHMNYSTLTDHIHNLHRKFPNLTHIYSAGQSVQGRELWVLVVS 99
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of
glp-1 protein.
Length = 1492
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 386 QSRGQFGGFPGTPYGAGSAAPYNYQPPPDMFSSIPSQYR 502
Q+ G FG PG P+G G AP PP + PS+Y+
Sbjct: 869 QASGPFGAPPGAPHGYG--APLQ-APPQAPYGYDPSRYQ 904
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 386 QSRGQFGGFPGTPYGAGSAAPYNYQPPPDMFSSIPSQYR 502
Q+ G FG PG P+G G AP PP + PS+Y+
Sbjct: 889 QASGPFGAPPGAPHGYG--APLQ-APPQAPYGYDPSRYQ 924
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 114 PAVAENTEE--LQFTGFEETNTESAPPNVCKVKPTQQLQSPPP 236
PA A T E ++ T E TE+ PP K P ++PPP
Sbjct: 151 PATAPVTPEPTVKNTTAAEPTTEAPPPPTTKAPPPPTTKAPPP 193
>AC006624-3|AAF39786.2| 301|Caenorhabditis elegans Hypothetical
protein C53D5.4 protein.
Length = 301
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Frame = +2
Query: 425 YGAGSAAPYNYQPPPDMFS--SIP-SQYRMAQAGVQLLANQGSLE 550
+GAG+ ++QPPPD++ IP + ++AQ + +LAN L+
Sbjct: 152 FGAGNIP--HFQPPPDLYQHHHIPHTSQQVAQENLAMLANVPKLD 194
>Z83234-5|CAB70171.2| 640|Caenorhabditis elegans Hypothetical
protein K09E4.2 protein.
Length = 640
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 108 EMPAVAENTEELQFTGFEETNTESAPPNVCKVKPTQQ 218
E+ + E + + +G EE NTE N CK + ++Q
Sbjct: 591 EISSAEEEASDDENSGEEEPNTEKIEQNSCKAEASEQ 627
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,968,407
Number of Sequences: 27780
Number of extensions: 322261
Number of successful extensions: 1100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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