Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0561.Seq
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.2  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    22   6.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.0  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 188 RWSAFCIGFFKSSKL 144
           RW   CIG++K +K+
Sbjct: 65  RWIFSCIGYYKLNKI 79


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 234 PQHYNHVAIREGTVGYQFRRRL 299
           P H+     R GTV Y  RR L
Sbjct: 161 PVHFALRIYRNGTVNYLMRRHL 182


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 234 PQHYNHVAIREGTVGYQFRRRL 299
           P H+     R GTV Y  RR L
Sbjct: 161 PVHFALRIYRNGTVNYLMRRHL 182


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 234 PQHYNHVAIREGTVGYQFRRRL 299
           P H+     R GTV Y  RR L
Sbjct: 212 PVHFALRIYRNGTVNYLMRRHL 233


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 234 PQHYNHVAIREGTVGYQFRRRL 299
           P H+     R GTV Y  RR L
Sbjct: 161 PVHFALRIYRNGTVNYLMRRHL 182


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
          peptide protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 42 KCSCGHHVVNP 10
          KC+C  HV+ P
Sbjct: 29 KCNCKRHVIKP 39


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 588 FSNVCNCEAHYS 623
           FS VC  +AHYS
Sbjct: 12  FSIVCQAKAHYS 23


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 446 PYNYQPPPDMFSSIPSQYR 502
           P   +  PD F S+ SQY+
Sbjct: 399 PLELKGSPDGFESVTSQYK 417


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -3

Query: 675 YSTHTAAF-AACTYGTNLLSSGLHSCRH 595
           Y+ H     AAC  G++L  S L  C H
Sbjct: 125 YANHCELHRAACHSGSSLTKSRLMRCLH 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,301
Number of Sequences: 438
Number of extensions: 4198
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)