Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0561.Seq
(731 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 34 0.11
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 34 0.11
At4g08380.1 68417.m01384 proline-rich extensin-like family prote... 31 0.60
At1g48930.1 68414.m05481 endo-1,4-beta-glucanase, putative / cel... 30 1.8
At1g26250.1 68414.m03202 proline-rich extensin, putative similar... 29 3.2
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 4.2
At1g23540.1 68414.m02960 protein kinase family protein contains ... 29 4.2
At1g64450.1 68414.m07306 proline-rich family protein contains pr... 28 7.3
At5g04170.1 68418.m00405 calcium-binding EF hand family protein ... 25 8.4
At4g12460.1 68417.m01971 oxysterol-binding family protein simila... 27 9.7
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 27 9.7
At3g15000.1 68416.m01897 expressed protein similar to DAG protei... 27 9.7
At2g05510.1 68415.m00583 glycine-rich protein 27 9.7
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +2
Query: 401 FGGFPGTPYGAGSAAPYNYQPPPDMFSSIP 490
FGG G P G G PY +PPP FS P
Sbjct: 171 FGG-QGPPMGRGPPPPYGMRPPPQQFSGPP 199
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +2
Query: 401 FGGFPGTPYGAGSAAPYNYQPPPDMFSSIP 490
FGG G P G G PY +PPP FS P
Sbjct: 171 FGG-QGPPMGRGPPPPYGMRPPPQQFSGPP 199
>At4g08380.1 68417.m01384 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 437
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 410 FPGTPYGAGSAAPYNYQPPPDMFSSIPSQY 499
+ PY S PY Y PPP +S PS Y
Sbjct: 192 YKSPPYVYSSPPPYAYSPPPYAYSPPPSPY 221
Score = 31.1 bits (67), Expect = 0.79
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 422 PYGAGSAAPYNYQPPPDMFSSIPSQY 499
PY S PY Y PPP +S PS Y
Sbjct: 141 PYVYSSPPPYAYSPPPYAYSPPPSPY 166
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 410 FPGTPYGAGSAAPYNYQPPPDMFSSIP 490
+ PY S PY Y PPP +S P
Sbjct: 367 YKSPPYVYSSPPPYTYSPPPYAYSPPP 393
>At1g48930.1 68414.m05481 endo-1,4-beta-glucanase, putative /
cellulase, putative similar to endo-beta-1,4-glucanase
GI:4972236 from [Fragaria x ananassa]
Length = 627
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 401 FGGFPGTPYGAGSAAPYNY-QPPPDMFSSIPSQYRMAQAGVQL 526
+GG G+ YG GS PY +P + + P+ Y Q+G Q+
Sbjct: 494 YGGSLGS-YGGGSYKPYETTKPAASSYKATPTTYSPKQSGAQI 535
>At1g26250.1 68414.m03202 proline-rich extensin, putative similar to
extensin gi|1165322|gb|AAB53156; contains proline-rich
extensin domains, INTERPRO:IPR002965
Length = 443
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 413 PGTPYGAGSAAPYNYQPPPDMFSSIP 490
P Y + S PY Y+PPP ++SS P
Sbjct: 46 PPYVYNSPSPPPYVYKPPPYIYSSPP 71
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 115 LLLRKIRRNYNLLDLKKPIQKALHLMCAK*SQRNNCSPH 231
L L++I++ Y +L K+ + L L K +NC+PH
Sbjct: 147 LRLQEIQKQYEMLPDKESVDGGLMLEAEKNDGLDNCAPH 185
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +3
Query: 159 EETNTESAPPNVCKVK---PTQQLQSPPP 236
E++ T APPN P+Q LQSPPP
Sbjct: 107 EDSETPPAPPNESNDNNPPPSQDLQSPPP 135
>At1g64450.1 68414.m07306 proline-rich family protein contains
proline rich extensins, INTERPRO:IPR0002965
Length = 342
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 407 GFPGTPYGAGSAAP 448
GFPGTP+G G P
Sbjct: 264 GFPGTPFGGGGTGP 277
>At5g04170.1 68418.m00405 calcium-binding EF hand family protein low
similarity to peflin [Homo sapiens] GI:6015440; contains
INTERPRO:IPR002048 calcium-binding EF-hand domain
Length = 354
Score = 25.0 bits (52), Expect(2) = 8.4
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +2
Query: 395 GQFGGFPGTPYGAGSAAPYNYQPPPDMFSS 484
G +GG P P +G Y PP + S
Sbjct: 141 GSYGGAPPRPASSGHGGGYGGYPPQASYGS 170
Score = 21.0 bits (42), Expect(2) = 8.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 245 QPRGYQGGYG 274
QP G+ GGYG
Sbjct: 121 QPSGHGGGYG 130
>At4g12460.1 68417.m01971 oxysterol-binding family protein similar
to SP|P22059 Oxysterol-binding protein 1 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 694
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/52 (28%), Positives = 19/52 (36%)
Frame = +3
Query: 87 ASVKKVWEMPAVAENTEELQFTGFEETNTESAPPNVCKVKPTQQLQSPPPQH 242
AS +W+ N FT F T E P K+ PT P +H
Sbjct: 565 ASASLLWKATKAPPNVTRYNFTSFAMTLNELIPGLEEKLPPTDSRLRPDQRH 616
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 419 TPYGAGSAAPYNYQPPPDMFSSIPSQYRMAQAGVQLLANQGSLE 550
TP+G +++P +Y PP S+ R Q G L+++ S+E
Sbjct: 237 TPFGRDTSSPVSYHSPPARVSA----DRTTQLGQYLISSPSSVE 276
>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
(required for chloroplast differentiation and palisade
development) GB:Q38732 [Antirrhinum majus]
Length = 395
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +2
Query: 404 GGFPGTPYGAGSAAPYNYQPPPDMFSSIPSQYRMAQAG 517
GG P YG G Y PPP + P Q G
Sbjct: 333 GGAPPPNYGGGPPPQYGAVPPPQYGGAPPQNNNYQQQG 370
>At2g05510.1 68415.m00583 glycine-rich protein
Length = 127
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 236 STLQPRGYQGGYGG 277
+T+QP GY GG+GG
Sbjct: 36 ATVQPEGYHGGHGG 49
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,211,418
Number of Sequences: 28952
Number of extensions: 305858
Number of successful extensions: 1203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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