Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0559.Seq
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.4  
07_03_0846 - 21983581-21986055                                         29   3.2  
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938...    29   4.2  
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224     29   5.5  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   5.5  
04_03_0210 + 12691551-12692099                                         28   9.7  

>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -1

Query: 223 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 89
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 81  DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 230
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>02_04_0276 +
           21491150-21492761,21492891-21492947,21493817-21493870,
           21493994-21494022
          Length = 583

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = -1

Query: 310 RTFGSCTRPSGRWCEATIRGLCLNASKAEAS--LAESGKDMLTVEPRESG--GSKQCDFT 143
           R  GS  RP    C A I+ L  +   AEA   LA  G D++      +G  G+ Q D  
Sbjct: 86  RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAA 145

Query: 142 SRV 134
            R+
Sbjct: 146 RRL 148


>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
          Length = 787

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +3

Query: 39  GAVMHVLRKKTDSID----LRDPNGLRRRVSRFECETRLVKSH 155
           G V+  L + TDS++    L +P+GL RRV  F  E+++   H
Sbjct: 340 GTVLRYLFQDTDSVNNSGGLLNPSGLLRRVRMFVPESQVTSMH 382


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 581 YKEFLARG-ARKVTTGITGLWQPSVLATLLFD 489
           YK F A G  RKV  GIT  + PS+L  L FD
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFD 664


>04_03_0210 + 12691551-12692099
          Length = 182

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 659 APREVSVLAELALGHLRYSLTDVPPQSNSPPGQWSRT 769
           APR +  L+  A   L  ++ D   Q+ +PP  WS T
Sbjct: 26  APRGIGPLSPAAAAKLVSAVNDARRQAGAPPVAWSAT 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,654,630
Number of Sequences: 37544
Number of extensions: 496212
Number of successful extensions: 1390
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)