Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0559.Seq
(787 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 29 3.8
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 29 3.8
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z70037-4|CAA93877.1| 146|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 28 8.7
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p... 28 8.7
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 28 8.7
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 548 VTTGITGL----WQPSVLATLLFDPSMSALPIIAKQNSPSV 438
VTTG++ L W P+ A DP+ S P+ A+ S SV
Sbjct: 2255 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2295
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 548 VTTGITGL----WQPSVLATLLFDPSMSALPIIAKQNSPSV 438
VTTG++ L W P+ A DP+ S P+ A+ S SV
Sbjct: 2277 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2317
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein
R11A8.7d protein.
Length = 1427
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 548 VTTGITGL----WQPSVLATLLFDPSMSALPIIAKQNSPSV 438
VTTG++ L W P+ A DP+ S P+ A+ S SV
Sbjct: 1098 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 1138
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein
R11A8.7c protein.
Length = 1405
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 548 VTTGITGL----WQPSVLATLLFDPSMSALPIIAKQNSPSV 438
VTTG++ L W P+ A DP+ S P+ A+ S SV
Sbjct: 1076 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 1116
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 548 VTTGITGL----WQPSVLATLLFDPSMSALPIIAKQNSPSV 438
VTTG++ L W P+ A DP+ S P+ A+ S SV
Sbjct: 2255 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2295
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 548 VTTGITGL----WQPSVLATLLFDPSMSALPIIAKQNSPSV 438
VTTG++ L W P+ A DP+ S P+ A+ S SV
Sbjct: 2277 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2317
>Z70037-4|CAA93877.1| 146|Caenorhabditis elegans Hypothetical
protein T27D12.3 protein.
Length = 146
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 289 RPSGRWCEATIRGLCLNASKAEAS 218
RPSG WC GL L ++ EAS
Sbjct: 35 RPSGPWCVKLFVGLYLQGNRNEAS 58
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 638 QASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGQWSRTGSR 778
Q+ F PF ++ L ++ +L D P NS P WSR R
Sbjct: 1926 QSQF-PFQEQQHLAYTNQTLRNMPQTLADTPDPVNSDPKVWSRRAKR 1971
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 638 QASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGQWSRTGSR 778
Q+ F PF ++ L ++ +L D P NS P WSR R
Sbjct: 1926 QSQF-PFQEQQHLAYTNQTLRNMPQTLADTPDPVNSDPKVWSRRAKR 1971
>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/66 (28%), Positives = 26/66 (39%)
Frame = +3
Query: 90 DPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPRMVAS 269
+ GL R + + ET +K H P S +V + R A A F PR+
Sbjct: 789 ESRGLHRHEEKAQIETSTIKIH---EPSSPPPSVHKFGAVNTRAAPAPVQFMQTPRIAVK 845
Query: 270 HHRPLG 287
H P G
Sbjct: 846 IHEPTG 851
>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/66 (28%), Positives = 26/66 (39%)
Frame = +3
Query: 90 DPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPRMVAS 269
+ GL R + + ET +K H P S +V + R A A F PR+
Sbjct: 789 ESRGLHRHEEKAQIETSTIKIH---EPSSPPPSVHKFGAVNTRAAPAPVQFMQTPRIAVK 845
Query: 270 HHRPLG 287
H P G
Sbjct: 846 IHEPTG 851
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 638 QASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGQWSRTGSR 778
Q+ F PF ++ L ++ +L D P NS P WSR R
Sbjct: 1926 QSQF-PFQEQQHLAYTNQTLRNMPQTLADTPDPVNSDPKVWSRRAKR 1971
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,326,847
Number of Sequences: 27780
Number of extensions: 384519
Number of successful extensions: 1016
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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