Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0557.Seq
         (770 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00003BFB0D Cluster: PREDICTED: hypothetical protein;...    40   0.091
UniRef50_Q2J4V8 Cluster: Phage integrase; n=1; Frankia sp. CcI3|...    36   1.5  
UniRef50_Q53L35 Cluster: Putative uncharacterized protein; n=1; ...    35   2.6  
UniRef50_Q5GU94 Cluster: Hemagglutinin; n=1; Xanthomonas oryzae ...    33   7.9  

>UniRef50_UPI00003BFB0D Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 133

 Score = 39.5 bits (88), Expect = 0.091
 Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
 Frame = +1

Query: 1   VKNDWDIYNSQXXXXXXXXXXKAGFNVGGRVRKISE-SRSEGPALSPRSAGLSPHRSAPA 177
           +KN+WDIY +                   R RK+SE S+SEGP+LS  S G S   ++PA
Sbjct: 8   MKNEWDIYKTNRSRRSSECSNPQAC----RSRKVSECSKSEGPSLS-TSPG-SDFLTSPA 61

Query: 178 MRSLSYCRAPHSRVSLRAAPD---SPSK 252
            RS+       SR S RA+ +   SPSK
Sbjct: 62  HRSVPLTSRHFSRTSSRASQNSLQSPSK 89


>UniRef50_Q2J4V8 Cluster: Phage integrase; n=1; Frankia sp.
           CcI3|Rep: Phage integrase - Frankia sp. (strain CcI3)
          Length = 207

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 455 HR-HR*GTHVRTASVAPVTLRAPCTQARVNS*APLFTPRLRAPKRPLQLLHQP 300
           HR H+  +H   A V P  LR P  QA +    P   PR R P+RP  L H P
Sbjct: 22  HRLHQRNSHPPLA-VRPDRLRHPTRQAEIRRRGPCHLPRPRHPRRPESLPHPP 73


>UniRef50_Q53L35 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 157

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -2

Query: 625 KPKCDGNS*TIVLIYSDGRVSSSQHDRRLVSTFNGL--LNSNSLSGTYH 485
           KPKC G    +  ++ D   S   HD+  V TF+    L+S+S+S TY+
Sbjct: 19  KPKCGGEDACVEALFGDCSTSLPHHDKSQVITFSDQEGLSSSSISPTYN 67


>UniRef50_Q5GU94 Cluster: Hemagglutinin; n=1; Xanthomonas oryzae pv.
           oryzae|Rep: Hemagglutinin - Xanthomonas oryzae pv.
           oryzae
          Length = 998

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 59  RRRRGSTWEAGCGKYRSHGPKARRCH 136
           R R G    AG G+YR H P+ R CH
Sbjct: 750 RGRCGGCGTAGLGRYRHHHPRGRHCH 775


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,276,750
Number of Sequences: 1657284
Number of extensions: 13249201
Number of successful extensions: 39714
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39700
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)