Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0557.Seq
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    27   3.0  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   5.2  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   9.1  

>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 300 RLVEKLKRALGXXXXXXXXXXXXVNACLCAGRAQSHRSDTRGADVRALPVTVNRRASTP 476
           ++VE +++ALG             +  L  G  +S + D+RG+    L  T NR  STP
Sbjct: 73  KVVEVVEKALGPHKSALLHCAIRQSRSLSVGNTRSLKRDSRGSSDHLL--TRNRSNSTP 129


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = -1

Query: 143 DRGDNAGPSDRDSDIF------RTLPPTLNPAFSADSEARRDL*ELYMSQSFF 3
           D    A P  +DS +F       ++P  +NPA++   +    L E Y+S  FF
Sbjct: 115 DTYSTAIPFSKDSSVFDAVGQQSSVPIHINPAYTNSHQNSYSLNETYLSYDFF 167


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 559 SQHDRRLVSTFNGLLNSNSLSGTYHR*CGVLARRFTVT 446
           S +D+ ++ST N      SLS  YH  C    ++ T+T
Sbjct: 570 SANDQEIISTPNSDFQQLSLSRLYHVLCSNRNKKNTIT 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,423
Number of Sequences: 5004
Number of extensions: 50323
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)