Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0557.Seq
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047...    31   0.77 
06_03_0536 + 21906583-21908037                                         30   2.4  
04_04_0095 - 22775340-22776017                                         29   5.4  
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98...    28   7.2  
05_01_0120 - 828834-831143                                             28   7.2  
06_01_0749 + 5599238-5600128                                           28   9.5  
03_01_0176 - 1416316-1416405,1416705-1416761,1416885-1417010,141...    28   9.5  
01_01_1125 - 8920590-8924372                                           28   9.5  

>12_02_0228 +
           15903452-15903812,15904153-15904202,15904615-15904713,
           15907146-15907415,15908045-15908125,15909033-15909599,
           15909677-15910053,15910326-15911613
          Length = 1030

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 23/63 (36%), Positives = 34/63 (53%)
 Frame = -2

Query: 361 LLSSRRDSERPSARFNFSTNLLWNFSSRAPPGGLPDPCWGCLAPHAARLASEARDSTTTS 182
           LLS  + S   SA+ + S + L + S +  PG  P   +G  AP ++ + S A  S TTS
Sbjct: 811 LLSGSQFSNSLSAQTSTSNSNLLS-SEKVNPGSSPSFAFGSSAPGSSPVFSLAVGSGTTS 869

Query: 181 ASP 173
           A+P
Sbjct: 870 ATP 872


>06_03_0536 + 21906583-21908037
          Length = 484

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
 Frame = -2

Query: 400 CARPAHKHALTHELLSSRRDSER----PSARFNFSTNLLWNFS 284
           C  P H  A  H LLS      R    P  R N S+NL+W  S
Sbjct: 357 CMHPLHVTAFCHRLLSGDEREWRPVCMPEHRSNISSNLVWTES 399


>04_04_0095 - 22775340-22776017
          Length = 225

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 133 SPRSAGLSPHRSAPAMRSLSYCRAPHSRVSLR 228
           +P S+G +  R +PA R LS C+AP   V +R
Sbjct: 141 APASSGSTWLRLSPACRELSGCKAPKLLVEVR 172


>05_01_0148 -
           985745-986180,986290-986385,986498-986694,986824-986919,
           987020-987059,987751-987857
          Length = 323

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +1

Query: 85  GRVRKISESRSEGPALS---PRSAGLSPH--RSAPAMRSLSYCRAPHSRVS 222
           GR R  S SRS   + S    RS   SP   R     RSLSY R+P   +S
Sbjct: 163 GRSRSYSRSRSRSRSYSRSRSRSLSGSPRARRELERSRSLSYSRSPRRSIS 213


>05_01_0120 - 828834-831143
          Length = 769

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 103 SESRSEGPALSPRSAGLSPHRSAPAMRSLSYCRAPHSRVSL-RAAPDSPSK 252
           S+  S+ P+LSP ++  +    +PA  + S+   P SR  L +++ + PSK
Sbjct: 517 SKYSSDSPSLSPSTSSPTSLGLSPASSNFSHTLVPSSRSPLHQSSNEEPSK 567


>06_01_0749 + 5599238-5600128
          Length = 296

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 109 SRSEGPALSPRSAGLSPHR-SAPAMRSLSYCRAPHSRVSLRAAP 237
           +R+  P+LSPR  G +P R S    R  S   A H   S    P
Sbjct: 50  ARAPNPSLSPRGGGGAPSRKSERRRRPRSLAMAVHGHASTSGGP 93


>03_01_0176 -
           1416316-1416405,1416705-1416761,1416885-1417010,
           1417944-1418150,1418235-1418714
          Length = 319

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 115 SEGPALSPRSAGLSPHRSAPAMRSLSYCRAPHSR--VSLRAAPDSP 246
           +  P LSP +A  + HRS PA+  L++   P  R  V LR A   P
Sbjct: 9   ARAPLLSP-AAVAAAHRSPPALLRLAFAPLPARRLAVPLRVAVGEP 53


>01_01_1125 - 8920590-8924372
          Length = 1260

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 23/73 (31%), Positives = 30/73 (41%)
 Frame = -2

Query: 397 ARPAHKHALTHELLSSRRDSERPSARFNFSTNLLWNFSSRAPPGGLPDPCWGCLAPHAAR 218
           A PA K A +     SR  +    AR + S      F   +P   L   CW  +AP AA 
Sbjct: 24  ASPATKSASSRRSAPSRMSAMSRPARPSRSIACATCFGGASP---LAPSCWCPVAPAAAA 80

Query: 217 LASEARDSTTTSA 179
            A+    +TT  A
Sbjct: 81  AAAATGAATTADA 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,121,133
Number of Sequences: 37544
Number of extensions: 387310
Number of successful extensions: 1309
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)