Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0557.Seq
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.59 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   1.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   1.0  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    25   1.0  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   7.3  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   7.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -1

Query: 152  SPADRGDNAGPSDRDSDIFRTLPPT---LNPAFSADSEARRD 36
            SP+DRG N   SDR      T PPT   ++ A S D ++ RD
Sbjct: 1380 SPSDRGRNDDGSDR-----LTSPPTPLSISRAGSRDEDSTRD 1416


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 403 LCARPAHKHALTHELLSSRRDSERPSA 323
           LC R  H+  L +ELLSS    ERP A
Sbjct: 50  LCGR--HEKRLLNELLSSYNTLERPVA 74


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 403 LCARPAHKHALTHELLSSRRDSERPSA 323
           LC R  H+  L +ELLSS    ERP A
Sbjct: 50  LCGR--HEKRLLNELLSSYNTLERPVA 74


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 271 PGGLPDPCWGCLAPHAARLASEARDSTTTSAS 176
           P  L +PC GC AP+  +        T+  AS
Sbjct: 13  PKSLKEPCDGCAAPYGYKNIMTLSQDTSHFAS 44


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 59  RRRRGSTWEAGCGKYRSHGPKARRCHHDRQ 148
           + +R   WE    KY S G   +R  H  Q
Sbjct: 91  KTKRPKDWERLSAKYDSTGEYKKRYEHGLQ 120


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 59  RRRRGSTWEAGCGKYRSHGPKARRCHHDRQ 148
           + +R   WE    KY S G   +R  H  Q
Sbjct: 91  KTKRPKDWERLSAKYDSTGEYKKRYEHGLQ 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,879
Number of Sequences: 438
Number of extensions: 3754
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)