Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0556.Seq
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   2.3  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   2.3  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   2.3  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   2.3  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   2.3  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   2.3  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   2.3  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   2.3  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   2.3  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   4.0  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   4.0  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   4.0  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    22   5.3  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   7.0  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    21   9.3  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 483 VDGVEWCYGLSAGHHRASPVDQSCSVGANST 391
           V+ +  CYG  A   ++SP     +  ANST
Sbjct: 7   VNSLAQCYGQQARDQQSSPGTDYYNPNANST 37


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 483 VDGVEWCYGLSAGHHRASPVDQSCSVGANST 391
           V+ +  CYG  A   ++SP     +  ANST
Sbjct: 7   VNSLAQCYGQQARDQQSSPGTDYYNPNANST 37


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 483 VDGVEWCYGLSAGHHRASPVDQSCSVGANST 391
           V+ +  CYG  A   ++SP     +  ANST
Sbjct: 7   VNSLAQCYGQQARDQQSSPGTDYYNPNANST 37


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 188 IYRPTSRSVTRLVTYPDVPHHVGESGSAHPWCSVSWTESLTVAVQH 325
           +Y  T  SVT  VTY   P    ES   +  CS+ +   +T+ V +
Sbjct: 137 LYIFTYLSVTCYVTYAWSPIDHTESNIINDMCSLYYILQITLIVNY 182


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 483 VDGVEWCYGLSAGHHRASPVDQSCSVGANST 391
           V+ +  CYG  A   ++SP     +  ANST
Sbjct: 7   VNSLAQCYGQQARDQQSSPGTDYYNPNANST 37


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 483 VDGVEWCYGLSAGHHRASPVDQSCSVGANST 391
           V+ +  CYG  A   ++SP     +  ANST
Sbjct: 7   VNSLAQCYGQQARDQQSSPGTDYYNPNANST 37


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 483 VDGVEWCYGLSAGHHRASPVDQSCSVGANST 391
           V+ +  CYG  A   ++SP     +  ANST
Sbjct: 7   VNSLAQCYGQQARDQQSSPGTDYYNPNANST 37


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 483 VDGVEWCYGLSAGHHRASPVDQSCSVGANST 391
           V+ +  CYG  A   ++SP     +  ANST
Sbjct: 7   VNSLAQCYGQQARDQQSSPGTDYYNPNANST 37


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 483 VDGVEWCYGLSAGHHRASPVDQSCSVGANST 391
           V+ +  CYG  A   ++SP     +  ANST
Sbjct: 7   VNSLAQCYGQQARDQQSSPGTDYYNPNANST 37


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 374 LSKMRPVEFAPTLQL*STGLALW 442
           L++ R +E A  LQL  T + +W
Sbjct: 278 LTRARRIEIASALQLNETQVKIW 300


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 374 LSKMRPVEFAPTLQL*STGLALW 442
           L++ R +E A  LQL  T + +W
Sbjct: 67  LTRARRIEIASALQLNETQVKIW 89


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 374 LSKMRPVEFAPTLQL*STGLALW 442
           L++ R +E A  LQL  T + +W
Sbjct: 67  LTRARRIEIASALQLNETQVKIW 89


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 411 SVGANSTGLIFESLGCFGAQEVIDG 337
           S G N  G I  SLG  G++ V  G
Sbjct: 213 SFGTNLVGGIVRSLGTLGSRVVESG 237


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 584 IVDAIRDAA*GHQKLSNVSVIAETVRIGSPYEYE*MVSSGATD 456
           I+DA++     H KL    ++  TV+     + +    S ATD
Sbjct: 61  ILDAMKKDPARHSKLEKADILEMTVKHLQNLQRQQAAMSAATD 103


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -3

Query: 161 RNRCTGYDSTGAETIGSTLKTEASRCRWTCRAD 63
           + RCT        TI   L T+ ++C    +A+
Sbjct: 48  KGRCTPEGKKLKSTIPEALSTDCAKCNEKVKAN 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,623
Number of Sequences: 336
Number of extensions: 3252
Number of successful extensions: 28
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)