Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0556.Seq
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    26   4.4  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    26   4.4  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    26   5.8  

>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/77 (23%), Positives = 32/77 (41%)
 Frame = +1

Query: 298 RIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIHRARSVVPRAKSVAPLDT 477
           R  + ++  L +++   FL        +    R+  D   L  +A++V  R K VA    
Sbjct: 26  RYPFYKKHLLELNSESTFLGLLTKGQADTSITRLNQDDVRLFEKAKTVADRTKDVA---- 81

Query: 478 IYSYSYGEPIRTVSAMT 528
              YS+ +PI +    T
Sbjct: 82  ---YSFSDPILSTQLRT 95


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/68 (22%), Positives = 32/68 (47%)
 Frame = +1

Query: 439 VVPRAKSVAPLDTIYSYSYGEPIRTVSAMTLTLLSFWCPYAASRIASTIFPSITSQPRSS 618
           ++P    +A +  I +Y YG     ++A T+ L      YA   + +T + ++  +  ++
Sbjct: 244 IIPITLEIAMVSGILTYKYGPSFSAIAATTVAL------YALFTVRTTSWRTVFRRQANA 297

Query: 619 LDAATSRA 642
            D+  S A
Sbjct: 298 ADSKASAA 305


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 490 SYGEPIRTVSAMTLTLLSFWCPYAASRIASTIFPSITSQPRSSLDAATSRACTTP 654
           +YG  I+ V       +S +CP     IA +   ++T +  S LD+  S A T P
Sbjct: 80  AYGIEIKKVIDPCDMEISGFCPMQTGNIALSGSHTLTGEALSILDSIPSIAYTVP 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,926
Number of Sequences: 5004
Number of extensions: 54543
Number of successful extensions: 158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)