Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0556.Seq
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1103 + 9085156-9085602 33 0.21
12_02_0285 - 16828173-16828661 31 1.1
12_02_0284 - 16791153-16791212,16791392-16791925,16792266-167926... 31 1.1
05_01_0609 + 5443780-5443875,5444540-5445136,5448792-5448881,544... 31 1.1
07_03_0082 - 13222635-13223350,13223368-13223928,13224095-132248... 30 1.5
12_02_0634 + 21416205-21416954 30 2.0
11_04_0171 + 14471717-14472124 29 3.4
04_04_1633 + 34928139-34928511,34928700-34928774,34929385-349294... 29 3.4
04_01_0402 + 5276017-5276241,5276299-5276753,5277004-5277070,527... 29 3.4
05_01_0093 - 617515-619260 29 4.5
02_04_0499 - 23485707-23485822,23485899-23486112,23486464-234865... 29 4.5
11_04_0301 + 16142236-16142945,16143748-16144247,16144557-161446... 28 6.0
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 28 7.9
07_03_0078 - 13147741-13148913 28 7.9
03_02_0652 - 10188076-10188243,10188353-10188541,10188633-101887... 28 7.9
>06_01_1103 + 9085156-9085602
Length = 148
Score = 33.1 bits (72), Expect = 0.21
Identities = 24/73 (32%), Positives = 31/73 (42%)
Frame = -3
Query: 248 DVAHQGTSRVELPTEMLDGKSVQPARASARNRCTGYDSTGAETIGSTLKTEASRCRWTCR 69
DV + + P EM + V+PARA+ RC+G + E I SR RW R
Sbjct: 56 DVGRRSGAATGQPEEMSTRRKVRPARATVFRRCSGEE----EVIPGMRAASRSRGRWWRR 111
Query: 68 ADASCRSHSRIPW 30
A R R W
Sbjct: 112 RPA-LRQGDRGGW 123
>12_02_0285 - 16828173-16828661
Length = 162
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = -3
Query: 212 PTEMLDGKSVQPARASARNRCTGYDSTGAETIGSTLKTEASRCRWTCRADASCRSHSRIP 33
P EM + V+PARA+ RC+G + E + SR RW R A CR
Sbjct: 37 PEEMSTRRKVRPARATVFRRCSGEE----EVMPGMRAASWSRGRWWRRRPA-CRQGDGGD 91
Query: 32 W 30
W
Sbjct: 92 W 92
>12_02_0284 -
16791153-16791212,16791392-16791925,16792266-16792637,
16793754-16794105,16794107-16794795,16821179-16821574
Length = 800
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = -3
Query: 212 PTEMLDGKSVQPARASARNRCTGYDSTGAETIGSTLKTEASRCRWTCRADASCRSHSRIP 33
P EM + V+PARA+ RC+G + E + SR RW R A CR
Sbjct: 37 PEEMSTRRKVRPARATVFRRCSGEE----EVMPGMRAASWSRGRWWRRRPA-CRQGDGGD 91
Query: 32 W 30
W
Sbjct: 92 W 92
>05_01_0609 +
5443780-5443875,5444540-5445136,5448792-5448881,
5449615-5450121
Length = 429
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 436 SEPGGSKLQCRREFDGSHLRKSWLLRSARSHRRQRWPVLDGDGKRFGPAH 287
S P GS ++ R G R+ LR+ + +RW DGDGK G +H
Sbjct: 283 SSPAGSDVRQRASMVGFWQRQRRQLRAVEAE--ERWAFDDGDGKINGRSH 330
>07_03_0082 -
13222635-13223350,13223368-13223928,13224095-13224839,
13226548-13226638,13227330-13227342,13227633-13227689,
13229170-13229260,13229444-13229476,13229588-13230085
Length = 934
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 427 GGSKLQCRREFDGSHLRKSWLLRSARSHRRQR 332
G KL RRE + S++ ++W LRS +H+ R
Sbjct: 496 GNQKLGPRREEESSNMSRAWRLRSDMTHKSLR 527
>12_02_0634 + 21416205-21416954
Length = 249
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = -3
Query: 212 PTEMLDGKSVQPARASARNRCTGYDSTGAETIGSTLKTEASRCRWTCRADA 60
P EM + V+PARA+ RC+G + E I SR RW R A
Sbjct: 69 PEEMSTRRKVRPARATVFRRCSGEE----EVIPGMRAASWSRGRWWRRRPA 115
>11_04_0171 + 14471717-14472124
Length = 135
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -1
Query: 340 RQRWPVLDGDGKRFGPAHGAPRMGGP*LSHVMWHIRVRHESSYRPR 203
R+RW + +RF P G PR GG + H+R+ H P+
Sbjct: 3 RRRW-IASASRRRFVPVFGLPRRGG---EWIKDHLRMLHMRGIAPK 44
>04_04_1633 +
34928139-34928511,34928700-34928774,34929385-34929483,
34929736-34929908,34929990-34930066,34930182-34930301,
34930385-34930472,34930610-34930716,34930814-34930871
Length = 389
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +2
Query: 275 PWCSVSWTESLTVAV-QHWPSLP 340
PW VSW ES + V QH+ SLP
Sbjct: 17 PWDDVSWAESTSSTVLQHYNSLP 39
>04_01_0402 +
5276017-5276241,5276299-5276753,5277004-5277070,
5277288-5277389
Length = 282
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/79 (20%), Positives = 31/79 (39%)
Frame = +3
Query: 429 GSLCGAPR*VRSTTRHHLLIFIRRTDPYRFSNDAYIAKLLVSLRSVTDSIHNLSFYHEPA 608
G+L G+ R + RH L +RR P + + + + D + +SF
Sbjct: 31 GNLAGSDPGTRDSLRHRTLALLRRAGPLVYFGGVHPGRQFTIMHLTADDLVGVSFCVSKQ 90
Query: 609 KKFTGRGNLACVHYSGKKA 665
K + + + V K++
Sbjct: 91 KSYKVKKTIRLVVRKNKRS 109
>05_01_0093 - 617515-619260
Length = 581
Score = 28.7 bits (61), Expect = 4.5
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +1
Query: 289 ELDRIAYRR-RPALAISAVDDFLRSEATKTFEDETRRIRADTAALIHRAR---SVVPRAK 456
EL R A RR P LA+ A +F R EA D + +RA L HRAR S++P +
Sbjct: 104 ELVRPAGRRGEPMLALLA--EF-RDEAHSASWDHSAFVRAYALYLDHRARFLISLLPAPR 160
Query: 457 SVAPLDTIYSYSYGEPIRTVSAM 525
+V D S G TV M
Sbjct: 161 TVRFADETGSPPRGSTAATVQEM 183
>02_04_0499 -
23485707-23485822,23485899-23486112,23486464-23486511,
23486609-23486695,23486808-23486945,23487159-23487389,
23488524-23489504
Length = 604
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 340 VDDFLRSEATKTFEDETRRIRADTAALIHRARSVVPRAKSVAPLDTI 480
VD + R+ E TR A +HRA + V R +SV PL+ +
Sbjct: 87 VDPWTRASLVAWMEGITRGHAGLAAGTLHRAVAYVDRYQSVRPLEAV 133
>11_04_0301 +
16142236-16142945,16143748-16144247,16144557-16144649,
16144879-16145005,16145265-16145468,16145587-16145692
Length = 579
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 130 PVLSYPVHRLRAEALAG*TDLPSNISVGNSTRD 228
P++ + HR R L G D+P+ + N+ RD
Sbjct: 436 PIVQWIPHRFRCSTLRGWNDVPNRAAAMNTLRD 468
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +1
Query: 442 VPRAKSVAPLDTIYSYSYGEPIRTVSAM---TLTLLSFWCPYAASRIASTIFPSITSQPR 612
VP +V+P T YS+ YG + SAM T L+ P ++ P + + P
Sbjct: 390 VPPGFTVSPATTRYSFGYG-GASSSSAMPHATTAPLALRAPAPHLCVSRMPPPLVPTPPA 448
Query: 613 SSLDAATSRACTTPVRRPSPT 675
+ AT TPV P T
Sbjct: 449 HAPPVATPPTLATPVPTPPVT 469
>07_03_0078 - 13147741-13148913
Length = 390
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +1
Query: 442 VPRAKSVAPLDTIYSYSYGEPIRTVSAMTLTLLSFWCPYAASRIASTIFPSITS 603
VPR KS P + Y Y Y P+ + + + L W Y +P S
Sbjct: 165 VPRFKSDLPWYSPYVYKYNNPVARLLLLVVQLTVGWPMYLVFNTWGRQYPRFAS 218
>03_02_0652 -
10188076-10188243,10188353-10188541,10188633-10188750,
10188841-10189491,10189870-10190033,10190137-10190574
Length = 575
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 360 GAQEVIDGRDGQCWTATVSDSVQLTEHHGWA 268
G + I +G+CWT+ V +LTE G A
Sbjct: 504 GLVDAIHNGEGKCWTSKVKCEEELTEAIGMA 534
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,236,547
Number of Sequences: 37544
Number of extensions: 430378
Number of successful extensions: 1385
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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