Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0556.Seq
(679 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_22120| Best HMM Match : 7tm_1 (HMM E-Value=0.0013) 29 3.5
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 29 4.6
SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14) 28 8.0
SB_30468| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +2
Query: 191 YRPTSRSVTRLVTYPDVPHHVGESG--SAHPWCSVSWTESLTVAVQHWPSLPSMTSCAPK 364
Y P+ V R T P P H S ++ W + + T V W +LPS+ S P
Sbjct: 385 YPPSPGGVRRDQTTPYPPTHGTSSSFSASTQWITTTTTAQSPVGTLPWGNLPSVPSNRPT 444
Query: 365 QPRLSKM 385
R +K+
Sbjct: 445 PNRPAKL 451
>SB_22120| Best HMM Match : 7tm_1 (HMM E-Value=0.0013)
Length = 313
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -2
Query: 678 YGWRRPSYRSSAR---TRGCRVQ*TSWLARDRRKD 583
Y WR P YR++ R GCR+ ++RDRR D
Sbjct: 278 YAWRLPKYRNAFREALCNGCRIV-ELVMSRDRRTD 311
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Frame = -3
Query: 257 LPRDVAHQGTSRVELPTEMLDGKSVQPARASAR---NRCTGYDSTGAETIGSTLKTEASR 87
L +D A + TS V++ +DG PA+ R N C D T ET L+ +
Sbjct: 970 LGQDGADKTTSNVQIDASSVDGLQQNPAKEDPRANENYCDHCDKTFEET--DALRLHVKK 1027
Query: 86 CRWTCR 69
W +
Sbjct: 1028 AVWVLK 1033
>SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 908
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 334 SAVDDFLRSEATKTFEDETRRIRADTAALIHRARSVVPRAKSVAPLDTIYSYSYGEP 504
+ +D FL++ A + ADTAA + A V +K + L T+ S ++ P
Sbjct: 661 TVLDSFLKASAAGGLGSVKAEVLADTAAALASANVQVVSSKVIGRLHTLISKTFISP 717
>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -3
Query: 230 TSRVELPTEMLDGKSVQPARASARNRCTGYDSTGAETIGSTLKTEASRCR 81
T + + DGK +P + ++CT + TG ET+ + S CR
Sbjct: 195 TINTRVTCDRCDGKKAEPG--TTHSKCTTCNGTGQETVNTGFFYMKSTCR 242
>SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 292 LDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIHRARS 438
++R RRP+L V F + + EDE +RA L HR RS
Sbjct: 92 MERKKKGRRPSLFRRFVGAFRNNPSNSEAEDEESELRAPPDYLSHRRRS 140
>SB_3742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1494
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 155 RCTGYDSTGAETIGSTLKTEASRCRWTCR 69
RCT +T TI +T T S R+TCR
Sbjct: 794 RCTTISATRCTTISATRCTTISTTRYTCR 822
>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1152
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +1
Query: 385 ETRRIRADTAALIHRARSVVPRAKSVAPLDTIYSYSYGEPIRTVSAMT 528
E R +RA + R S T Y Y YG+P+RTV A T
Sbjct: 776 EGRSVRASSLLRQLAKGGCAARRLSWLKPKTPYIYYYGDPVRTVGATT 823
>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
Length = 1089
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 326 WPSLPSMTSCAPKQPRLSKMRPVEFAPT 409
W L +PK PR+ ++ V+FAPT
Sbjct: 465 WDQLEENDVASPKSPRVDQVVRVQFAPT 492
>SB_30468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -3
Query: 194 GKSVQPARASARNRCTGYDSTGAETIGSTLKTEASRCRWTCRADASCRSHSR 39
G ++ A+ +RC GY G T+ SR R T +D + R HS+
Sbjct: 178 GAGLRTAQGDHHSRCRGYSLPGNVTVVRPRSRSPSRTRKT--SDETPRQHSK 227
>SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 326 WPSLPSMTSCAPKQPRLSKMRPVEFAPT 409
W L +PK PR+ ++ V+FAPT
Sbjct: 164 WDQLEENDVASPKSPRVDQVVRVQFAPT 191
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,703,934
Number of Sequences: 59808
Number of extensions: 474780
Number of successful extensions: 1398
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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