Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0556.Seq
         (679 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060997-1|AAL28545.1|  619|Drosophila melanogaster HL01392p pro...    36   0.067
AE014297-1191|AAF54549.3|  619|Drosophila melanogaster CG6544-PA...    36   0.067
AY070665-1|AAL48136.1|  123|Drosophila melanogaster RH04612p pro...    31   1.4  
BT024337-1|ABC86399.1|  315|Drosophila melanogaster IP09831p pro...    31   1.9  
AE014134-2441|AAF53363.2|  284|Drosophila melanogaster CG16873-P...    31   1.9  

>AY060997-1|AAL28545.1|  619|Drosophila melanogaster HL01392p
           protein.
          Length = 619

 Score = 35.5 bits (78), Expect = 0.067
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +1

Query: 310 RRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIHRARS-VVPRAKSVAPLDTIYS 486
           R  P     A+ ++L +E   TF +ET RIR    +LI    + VV RA+S  P   +  
Sbjct: 178 RLPPGYGARALTNYLNTEPFTTFSEETSRIRNRAQSLIRDLHTPVVRRARSCTPF-PVTG 236

Query: 487 YSYGEP 504
           Y+Y EP
Sbjct: 237 YTY-EP 241



 Score = 33.5 bits (73), Expect = 0.27
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 525 DAYIAKLLVSLRSVTDSIHNLSFYHEPAKKF 617
           DAY+A++   +R +   +HN+S Y  PA K+
Sbjct: 248 DAYVARVTNPVRHIAKEVHNISHYPRPAVKY 278


>AE014297-1191|AAF54549.3|  619|Drosophila melanogaster CG6544-PA,
           isoform A protein.
          Length = 619

 Score = 35.5 bits (78), Expect = 0.067
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +1

Query: 310 RRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIHRARS-VVPRAKSVAPLDTIYS 486
           R  P     A+ ++L +E   TF +ET RIR    +LI    + VV RA+S  P   +  
Sbjct: 178 RLPPGYGARALTNYLNTEPFTTFSEETSRIRNRAQSLIRDLHTPVVRRARSCTPF-PVTG 236

Query: 487 YSYGEP 504
           Y+Y EP
Sbjct: 237 YTY-EP 241



 Score = 33.5 bits (73), Expect = 0.27
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 525 DAYIAKLLVSLRSVTDSIHNLSFYHEPAKKF 617
           DAY+A++   +R +   +HN+S Y  PA K+
Sbjct: 248 DAYVARVTNPVRHIAKEVHNISHYPRPAVKY 278


>AY070665-1|AAL48136.1|  123|Drosophila melanogaster RH04612p
           protein.
          Length = 123

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 269 AHPWCSVSWTESLTVAVQHWPSLPSMTSCAPKQPRLSKMRPVEFAPT 409
           A P+ ++S       + +HW  LP + SC P  P  ++ RP + AP+
Sbjct: 69  ASPYAAMSPLRMWLRSARHWALLPCILSCVP--PAATRPRPPDPAPS 113


>BT024337-1|ABC86399.1|  315|Drosophila melanogaster IP09831p
           protein.
          Length = 315

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 466 PLDTIYSYSYGEPIRTVSAMTLTLLSFWCP-YAASRI 573
           P DT+  YSY   I+T  A  L+L+   C  Y+ASR+
Sbjct: 103 PPDTVEKYSYPSVIQTDQANRLSLIEVCCTGYSASRL 139


>AE014134-2441|AAF53363.2|  284|Drosophila melanogaster CG16873-PA
           protein.
          Length = 284

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 466 PLDTIYSYSYGEPIRTVSAMTLTLLSFWCP-YAASRI 573
           P DT+  YSY   I+T  A  L+L+   C  Y+ASR+
Sbjct: 103 PPDTVEKYSYPSVIQTDQANRLSLIEVCCTGYSASRL 139


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,813,951
Number of Sequences: 53049
Number of extensions: 674624
Number of successful extensions: 2346
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2344
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)