Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0556.Seq
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical ...    32   0.43 
AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical ...    32   0.43 
AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF040661-9|AAG24214.1|  345|Caenorhabditis elegans Hypothetical ...    28   7.0  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    28   7.0  

>AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical
           protein K06A5.8a protein.
          Length = 874

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 309 PSPSSTGHLCRR*LLA-LRSNQDFRR*DPSNSRRHCSFDPPGSLCG 443
           P+P    HLC    L  L  ++DF+  +PS++R  C F+    LCG
Sbjct: 143 PTPEDYRHLCALLTLPKLSDHEDFKNWNPSSARVEC-FNKVNQLCG 187


>AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical
           protein K06A5.8b protein.
          Length = 942

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 309 PSPSSTGHLCRR*LLA-LRSNQDFRR*DPSNSRRHCSFDPPGSLCG 443
           P+P    HLC    L  L  ++DF+  +PS++R  C F+    LCG
Sbjct: 143 PTPEDYRHLCALLTLPKLSDHEDFKNWNPSSARVEC-FNKVNQLCG 187


>AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical
           protein Y48C3A.12 protein.
          Length = 675

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 577 STIFPSITSQPRSSLDAATSRACTTPVRRPSPT 675
           ST   + TS P +S+ AAT+   TT   +PSPT
Sbjct: 616 STSTTAYTSTPTASIPAATAITTTTAPPKPSPT 648


>AF040661-9|AAG24214.1|  345|Caenorhabditis elegans Hypothetical
           protein W10G11.5 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 471 EWCYGLSAGHHRA-SPVDQSC-SVGANSTGL 385
           +WC  +  GHH A +  +++C S+G   TGL
Sbjct: 187 KWCIKVFIGHHAAQADAEEACRSIGTTLTGL 217


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 474 VEWCYGLSAGHHRASPVDQSCSVGANSTGLIFESLGCFGAQEVIDGRDGQC 322
           VE C  LS    R  P   SC +   + G + E   C G ++ + G D QC
Sbjct: 356 VEIC-SLSEPPRRGCPSGWSCLLTNGTIGCLQEQQLCDGRRDCMSGIDEQC 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,341,006
Number of Sequences: 27780
Number of extensions: 330429
Number of successful extensions: 888
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)