Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0553.Seq
         (784 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q62KQ1 Cluster: Conserved domain protein; n=27; Burkhol...    35   2.6  
UniRef50_UPI0000EBC4AF Cluster: PREDICTED: similar to amyotrophi...    34   3.5  
UniRef50_A6S8N9 Cluster: Predicted protein; n=2; Sclerotiniaceae...    34   3.5  
UniRef50_Q8I4Z0 Cluster: Glucose inhibited division protein A ho...    33   8.1  

>UniRef50_Q62KQ1 Cluster: Conserved domain protein; n=27;
           Burkholderia|Rep: Conserved domain protein -
           Burkholderia mallei (Pseudomonas mallei)
          Length = 349

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 306 RASGRLGVPRDH-EMPVRSNSPTVAAAPAVPYRPSRKYP 193
           RA GR+   R H ++P    +P + AAP  P+ P  +YP
Sbjct: 58  RARGRIHASRRHPDLPAAPAAPAMPAAPDSPFEPPERYP 96


>UniRef50_UPI0000EBC4AF Cluster: PREDICTED: similar to amyotrophic
           lateral sclerosis 2 (juvenile) chromosome region,
           candidate 4, partial; n=1; Bos taurus|Rep: PREDICTED:
           similar to amyotrophic lateral sclerosis 2 (juvenile)
           chromosome region, candidate 4, partial - Bos taurus
          Length = 179

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 306 RASGRLGVPRDHEMPVRSNSPTVAA-APAVPY-RPSRKYPHRTLPMYSSTN 160
           RA  RLGV  DH  P R+  P  +A    +P  RP +K P    P+ S+++
Sbjct: 88  RADSRLGVEEDHRRPPRALPPVPSAIQDDIPLSRPKKKKPRTKTPLASASS 138


>UniRef50_A6S8N9 Cluster: Predicted protein; n=2;
           Sclerotiniaceae|Rep: Predicted protein - Botryotinia
           fuckeliana B05.10
          Length = 292

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 282 PRDHEMPVRSNSPTVAAAPAVPYRPSRKYPHRTLPMYSSTNFKY 151
           PR+H  PVR  +P+ AA P  P RP ++   R      S N  Y
Sbjct: 122 PRNHAPPVRVRAPSDAAVPNSPSRPEKESSIRKFLSRKSLNTNY 165


>UniRef50_Q8I4Z0 Cluster: Glucose inhibited division protein A
            homologue, putative; n=4; Plasmodium|Rep: Glucose
            inhibited division protein A homologue, putative -
            Plasmodium falciparum (isolate 3D7)
          Length = 972

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 542  NETIENFTYLNKYKNIVMISVNRGHGIVLCILNYLYKYIHY 664
            NE IE    LNK+K   +   N+  G+ +  +NYLY +I Y
Sbjct: 927  NEEIEK---LNKFKPQTLFEANKIEGVTMSAVNYLYYHIKY 964


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,010,157
Number of Sequences: 1657284
Number of extensions: 10265657
Number of successful extensions: 27971
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27941
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)