Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0553.Seq
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    29   0.042
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    23   2.8  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    23   2.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   6.4  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 0.042
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 270 EMPVRSNSPTVAAAPAVPYRPSRKYPHRTLPMYS 169
           ++ V      +   PAVPY P  +Y +R  P+Y+
Sbjct: 234 QLEVNERKENLTCQPAVPYVPFYRYCYRPYPVYN 267


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -2

Query: 252 NSPTVAAAPAVPYRPSRKYPHRTLPMYSSTNFKYL*STITLRLLNN 115
           NS  + A  A P  P R Y H   P       + + S   L+L NN
Sbjct: 37  NSRWMVAGKADPEMPKRMYIHPDSPSTGEQWMQKVVSFHKLKLTNN 82


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -2

Query: 252 NSPTVAAAPAVPYRPSRKYPHRTLPMYSSTNFKYL*STITLRLLNN 115
           NS  + A  A P  P R Y H   P       + + S   L+L NN
Sbjct: 37  NSRWMVAGKADPEMPKRMYIHPDSPSTGEQWMQKVVSFHKLKLTNN 82


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 180 VVYGVDIFVRVGTGRPVPPL 239
           +V G+++ ++VGT   +PP+
Sbjct: 677 IVIGMNLVLQVGTHADLPPV 696


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,579
Number of Sequences: 336
Number of extensions: 2854
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)