Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0553.Seq
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   9.3  

>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 246 PTVAAAPAVPYRPSRKYPHRTLPMYSSTNFKYL*STITLRLLNNY 112
           P+V A  A  Y PS  + HR    +  TN     STI+ + L NY
Sbjct: 252 PSVVADDAADYIPSEGFHHRASRYWPITNLDSF-STISEKELLNY 295


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 282 PRDHEMPVRSNSPTVAAAPAVPYRPS 205
           P     P R  +P V  AP+VP RP+
Sbjct: 539 PEVPSAPQRPAAPVVPEAPSVPQRPA 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,568
Number of Sequences: 5004
Number of extensions: 44745
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)